Entering edit mode
Scott Christley
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10
@scott-christley-6378
Last seen 10.4 years ago
Hello,
There seems to be a problem with read.ilmn() with the new version of
limma. When trying to read the control file, there is an error that
row names are not unique.
x <- read.ilmn(files="probe-profile.txt", ctrlfiles="JAlverdy-JDeF-
Dec2-13-ControlProbeData-FinalReport.txt", other.columns="Detection?)
Error in `row.names<-.data.frame`(`*tmp*`, value = c(2900458L,
7200743L, :
duplicate 'row.names' are not allowed
In addition: Warning message:
non-unique values when setting 'row.names': ?1400044?, ?2600040?,
?6450180?
I looked at the control file, and there are indeed 3 rows with the
same ProbeID number. I?m not sure if that is an error or something
about the specific output from BeadStudio.
thanks
Scott