----- Original Message ----- > From: "David Iles" <d.e.iles at="" leeds.ac.uk=""> > To: "Hans-Ulrich Klein" <h.klein at="" uni-muenster.de=""> > Cc: bioconductor at r-project.org > Sent: Wednesday, February 5, 2014 10:00:32 AM > Subject: Re: [BioC] BiSeq - readBismark error > > Hi, > > Thanks for the warning. When will the BiSeq 1.2.4 package be > available? I?m about to start a methylation analysis ?. Assuming all goes well with the builds tonight, it should be available tomorrow morning around 11AM Seattle time. Dan > > Dr David Iles > Visiting Research Fellow > School of Biology > University of Leeds > Leeds LS2 9JT > UK > d.e.iles at leeds.ac.uk<mailto:d.e.iles at="" leeds.ac.uk=""> > > > > > > > On 5 Feb 2014, at 17:29, Hans-Ulrich Klein > <h.klein at="" uni-muenster.de<mailto:h.klein="" at="" uni-muenster.de="">> wrote: > > Dear all, > > We would like to inform users of the BiSeq package, that there was in > error in the readBismark() function that may - depending on the files > and the order they were read in - lead to false methylation values. > Affected BiSeq versions are 1.2.0 to 1.2.3. If you have used one of > these versions to read in Bismark output, we suggest to update to > version 1.2.4 and compare the obtained methylation values. I am > really > sorry for this. > > Best regards, > Hans > > -- > Dr. Hans-Ulrich Klein > Institute of Medical Informatics > University of M?nster > Albert-Schweitzer-Campus 1 > Geb?ude A11 > 48149 M?nster, Germany > Tel.: +49 (0)251 83-58405 > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org<mailto:bioconductor at="" r-project.org=""> > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor >

Hi David, I assme that the new version is going to be available within 24 hours. Of course, it is available on SVN already. Best, Katja David Iles schrieb am 2014-02-05: > Hi, > Thanks for the warning. When will the BiSeq 1.2.4 package be > available? I?m about to start a methylation analysis ?. > Dr David Iles > Visiting Research Fellow > School of Biology > University of Leeds > Leeds LS2 9JT > UK > d.e.iles at leeds.ac.uk<mailto:d.e.iles at="" leeds.ac.uk=""> > On 5 Feb 2014, at 17:29, Hans-Ulrich Klein > <h.klein at="" uni-muenster.de<mailto:h.klein="" at="" uni-muenster.de="">> wrote: > Dear all, > We would like to inform users of the BiSeq package, that there was in > error in the readBismark() function that may - depending on the files > and the order they were read in - lead to false methylation values. > Affected BiSeq versions are 1.2.0 to 1.2.3. If you have used one of > these versions to read in Bismark output, we suggest to update to > version 1.2.4 and compare the obtained methylation values. I am > really > sorry for this. > Best regards, > Hans > -- > Dr. Hans-Ulrich Klein > Institute of Medical Informatics > University of M?nster > Albert-Schweitzer-Campus 1 > Geb?ude A11 > 48149 M?nster, Germany > Tel.: +49 (0)251 83-58405 > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org<mailto:bioconductor at="" r-project.org=""> > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor