Entering edit mode
Jerry Cholo
▴
190
@jerry-cholo-6218
Last seen 10.1 years ago
Hello,
I ran this line:
> sft=pickSoftThreshold(datExprFemale,powerVector=powers)
I got this error:
Error in { :
task 1 failed - ""corFast" not available for .C() for package
"WGCNA""
Here is:
> sessionInfo()
----------------------------------------------------------------------
--------------------------------------------------
R version 3.0.2 (2013-09-25)
Platform: x86_64-w64-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United
States.1252
[3] LC_MONETARY=English_United States.1252
LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] parallel splines grid stats graphics grDevices utils
datasets methods
[10] base
other attached packages:
[1] nlme_3.1-113 igraph_0.7.0 GEOquery_2.28.0
Biobase_2.22.0
[5] BiocGenerics_0.8.0 cluster_1.14.4 BiocInstaller_1.12.0
WGCNA_1.34
[9] Hmisc_3.14-0 Formula_1.1-1 survival_2.37-7
lattice_0.20-24
[13] flashClust_1.01-2 dynamicTreeCut_1.60-1
loaded via a namespace (and not attached):
Error in x[["Version"]] : subscript out of bounds
In addition: Warning message:
In FUN(c("codetools", "compiler", "doParallel", "foreach", "impute",
:
DESCRIPTION file of package 'impute' is missing or broken
----------------------------------------------------------------------
----------------------------------------------------
I reinstall all these packages "codetools", "compiler", "doParallel",
"foreach", "impute", and
I still got this error when I ran this function:
> sft=pickSoftThreshold(datExprFemale,powerVector=powers)
Error in { :
task 1 failed - ""corFast" not available for .C() for package
"WGCNA""
May someone let me know how I could fix it?
Thanks,
Jerry
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