Hi EdgeR community: I'm reading the edgeR manual<http: www.bioconductor.org="" packages="" release="" bioc="" vignettes="" edg="" er="" inst="" doc="" edgerusersguide.pdf=""> and have a question: In example page 31: "3.5 Comparisons Both Between and Within Subjects" After estimating the dispersions (*code not shown*), we can fit a linear model: .... Should the "*code not shown" *in this case be: > y <- estimateGLMCommonDisp(y,design) > y <- estimateGLMTrendedDisp(y,design) > y <- estimateGLMTagwiseDisp(y,design) Thank you! Son. [[alternative HTML version deleted]]