installing flowDensity
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Raghu ▴ 20
@raghu-6490
Last seen 10.2 years ago
Dear all, I am unable to install flowDensity package for cytometry analysis. The error in both 3.0 and 3.1 versions of R (ubuntu 12.04) shows using normal install.packages('flowDensity') and bioconductor installtion, the error message is Warning message: package ?flowDensity? is not available (for R version 3.1.0 beta) Thanks, Raghu
flowDensity flowDensity • 2.0k views
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Dan Tenenbaum ★ 8.2k
@dan-tenenbaum-4256
Last seen 5 months ago
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----- Original Message ----- > From: "Raghu" <eraghu at="" mpi-muenster.mpg.de=""> > To: bioconductor at r-project.org > Sent: Wednesday, April 9, 2014 12:17:46 PM > Subject: [BioC] installing flowDensity > > Dear all, > > I am unable to install flowDensity package for cytometry analysis. > The > error in both 3.0 and 3.1 versions of R (ubuntu 12.04) shows > > using normal install.packages('flowDensity') and bioconductor > installtion, the error message is > Warning message: > package ?flowDensity? is not available (for R version 3.1.0 beta) Please show us how you tried to install the package. The recommended way is: source('http://bioconductor.org/biocLite.R') biocLite('flowDensity') In order to help us diagnose your problem, please also send the output of the sessionInfo() and biocinstallRepos() commands. Dan > > Thanks, > Raghu > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor >
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This is the output when installing in R v3.1 beta (ubuntu 12.04) ================================================= > source('http://bioconductor.org/biocLite.R') Bioconductor version 2.13 (BiocInstaller 1.12.0), ?biocLite for help > biocLite('flowDensity') BioC_mirror: http://bioconductor.org Using Bioconductor version 2.13 (BiocInstaller 1.12.0), R version 3.1.0. Installing package(s) 'flowDensity' Warning message: package ?flowDensity? is not available (for R version 3.1.0 beta) > sessionInfo() R version 3.1.0 beta (2014-03-28 r65330) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] BiocInstaller_1.12.0 loaded via a namespace (and not attached): [1] tools_3.1.0 > biocinstallRepos() BioCsoft "http://bioconductor.org/packages/2.13/bioc" BioCann "http://bioconductor.org/packages/2.13/data/annotation" BioCexp "http://bioconductor.org/packages/2.13/data/experiment" BioCextra "http://bioconductor.org/packages/2.13/extra" CRAN "http://cran.fhcrc.org" when trying to install in R v3.0 (this is in windows -7) ================================================= > source('http://bioconductor.org/biocLite.R') Bioconductor version 2.13 (BiocInstaller 1.12.0), ?biocLite for help > biocLite('flowDensity') BioC_mirror: http://bioconductor.org Using Bioconductor version 2.13 (BiocInstaller 1.12.0), R version 3.0.3. Installing package(s) 'flowDensity' Warning message: package ?flowDensity? is not available (for R version 3.0.3) > sessionInfo() R version 3.0.3 (2014-03-06) Platform: i386-w64-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252 [3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C [5] LC_TIME=German_Germany.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] BiocInstaller_1.12.0 loaded via a namespace (and not attached): [1] tools_3.0.3 > biocinstallRepos() BioCsoft "http://bioconductor.org/packages/2.13/bioc" BioCann "http://bioconductor.org/packages/2.13/data/annotation" BioCexp "http://bioconductor.org/packages/2.13/data/experiment" BioCextra "http://bioconductor.org/packages/2.13/extra" CRAN "http://cran.fhcrc.org" CRANextra "http://www.stats.ox.ac.uk/pub/RWin" regards, Raghu On Thu 10 Apr 2014 07:31:13 AM CEST, Dan Tenenbaum wrote: > > > ----- Original Message ----- >> From: "Raghu" <eraghu at="" mpi-muenster.mpg.de=""> >> To: bioconductor at r-project.org >> Sent: Wednesday, April 9, 2014 12:17:46 PM >> Subject: [BioC] installing flowDensity >> >> Dear all, >> >> I am unable to install flowDensity package for cytometry analysis. >> The >> error in both 3.0 and 3.1 versions of R (ubuntu 12.04) shows >> >> using normal install.packages('flowDensity') and bioconductor >> installtion, the error message is >> Warning message: >> package ?flowDensity? is not available (for R version 3.1.0 beta) > > Please show us how you tried to install the package. > > The recommended way is: > > source('http://bioconductor.org/biocLite.R') > biocLite('flowDensity') > > In order to help us diagnose your problem, please also send the output of > the sessionInfo() and biocinstallRepos() commands. > > Dan > > > > >> >> Thanks, >> Raghu >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> -- Raghu Erapaneedi Max Planck Institute for Molecular Biomedicine Mammalian Cell Signalling Laboratory Department of Vascular Cell Biology Roentgenstr-20 D-48149 Muenster Germany Tel:+49(0)251-70365-223
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Please see my subsequent email, quoted here: --- Martin points out that there is no package called flowDensity. Looks like there is something called the "flowDensity gating plugin" for openCyto but I don't know how you install it. You should contact the maintainer of openCyto (maintainer email address available at http://bioconductor.org/packages/release/bioc/html/openCyto.html). --- Dan ----- Original Message ----- > From: "Raghu" <eraghu at="" mpi-muenster.mpg.de=""> > To: "Dan Tenenbaum" <dtenenba at="" fhcrc.org=""> > Cc: bioconductor at r-project.org > Sent: Thursday, April 10, 2014 12:29:45 AM > Subject: Re: [BioC] installing flowDensity > > This is the output when installing in R v3.1 beta (ubuntu 12.04) > ================================================= > > source('http://bioconductor.org/biocLite.R') > Bioconductor version 2.13 (BiocInstaller 1.12.0), ?biocLite for help > > biocLite('flowDensity') > > BioC_mirror: http://bioconductor.org > Using Bioconductor version 2.13 (BiocInstaller 1.12.0), R version > 3.1.0. > Installing package(s) 'flowDensity' > Warning message: > package ?flowDensity? is not available (for R version 3.1.0 beta) > > sessionInfo() > R version 3.1.0 beta (2014-03-28 r65330) > Platform: x86_64-pc-linux-gnu (64-bit) > > locale: > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C > [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 > [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 > [7] LC_PAPER=en_US.UTF-8 LC_NAME=C > [9] LC_ADDRESS=C LC_TELEPHONE=C > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] BiocInstaller_1.12.0 > > loaded via a namespace (and not attached): > [1] tools_3.1.0 > > biocinstallRepos() > BioCsoft > "http://bioconductor.org/packages/2.13/bioc" > BioCann > "http://bioconductor.org/packages/2.13/data/annotation" > BioCexp > "http://bioconductor.org/packages/2.13/data/experiment" > BioCextra > "http://bioconductor.org/packages/2.13/extra" > CRAN > "http://cran.fhcrc.org" > > when trying to install in R v3.0 (this is in windows -7) > ================================================= > > > > source('http://bioconductor.org/biocLite.R') > Bioconductor version 2.13 (BiocInstaller 1.12.0), ?biocLite for help > > biocLite('flowDensity') > BioC_mirror: http://bioconductor.org > Using Bioconductor version 2.13 (BiocInstaller 1.12.0), R version > 3.0.3. > Installing package(s) 'flowDensity' > Warning message: > package ?flowDensity? is not available (for R version 3.0.3) > > sessionInfo() > R version 3.0.3 (2014-03-06) > Platform: i386-w64-mingw32/i386 (32-bit) > > locale: > [1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252 > [3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C > [5] LC_TIME=German_Germany.1252 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] BiocInstaller_1.12.0 > > loaded via a namespace (and not attached): > [1] tools_3.0.3 > > biocinstallRepos() > BioCsoft > "http://bioconductor.org/packages/2.13/bioc" > BioCann > "http://bioconductor.org/packages/2.13/data/annotation" > BioCexp > "http://bioconductor.org/packages/2.13/data/experiment" > BioCextra > "http://bioconductor.org/packages/2.13/extra" > CRAN > "http://cran.fhcrc.org" > CRANextra > "http://www.stats.ox.ac.uk/pub/RWin" > > > > regards, > Raghu > > > > On Thu 10 Apr 2014 07:31:13 AM CEST, Dan Tenenbaum wrote: > > > > > > ----- Original Message ----- > >> From: "Raghu" <eraghu at="" mpi-muenster.mpg.de=""> > >> To: bioconductor at r-project.org > >> Sent: Wednesday, April 9, 2014 12:17:46 PM > >> Subject: [BioC] installing flowDensity > >> > >> Dear all, > >> > >> I am unable to install flowDensity package for cytometry analysis. > >> The > >> error in both 3.0 and 3.1 versions of R (ubuntu 12.04) shows > >> > >> using normal install.packages('flowDensity') and bioconductor > >> installtion, the error message is > >> Warning message: > >> package ?flowDensity? is not available (for R version 3.1.0 beta) > > > > Please show us how you tried to install the package. > > > > The recommended way is: > > > > source('http://bioconductor.org/biocLite.R') > > biocLite('flowDensity') > > > > In order to help us diagnose your problem, please also send the > > output of > > the sessionInfo() and biocinstallRepos() commands. > > > > Dan > > > > > > > > > >> > >> Thanks, > >> Raghu > >> > >> _______________________________________________ > >> Bioconductor mailing list > >> Bioconductor at r-project.org > >> https://stat.ethz.ch/mailman/listinfo/bioconductor > >> Search the archives: > >> http://news.gmane.org/gmane.science.biology.informatics.conductor > >> > > > > -- > Raghu Erapaneedi > Max Planck Institute for Molecular Biomedicine > Mammalian Cell Signalling Laboratory > Department of Vascular Cell Biology > Roentgenstr-20 > D-48149 Muenster > Germany > Tel:+49(0)251-70365-223 >
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Dan Tenenbaum ★ 8.2k
@dan-tenenbaum-4256
Last seen 5 months ago
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Martin points out that there is no package called flowDensity. Looks like there is something called the "flowDensity gating plugin" for openCyto but I don't know how you install it. You should contact the maintainer of openCyto (email address available at http://bioconductor.org/packages/release/bioc/html/openCyto.html). Dan ----- Original Message ----- > From: "Martin Morgan" <mtmorgan at="" fhcrc.org=""> > To: "Dan Tenenbaum" <dtenenba at="" fhcrc.org=""> > Sent: Wednesday, April 9, 2014 10:35:54 PM > Subject: Re: [BioC] installing flowDensity > > I don't think there is a package 'flowDensity' Martin > > On 04/09/2014 10:31 PM, Dan Tenenbaum wrote: > > > > > > ----- Original Message ----- > >> From: "Raghu" <eraghu at="" mpi-muenster.mpg.de=""> > >> To: bioconductor at r-project.org > >> Sent: Wednesday, April 9, 2014 12:17:46 PM > >> Subject: [BioC] installing flowDensity > >> > >> Dear all, > >> > >> I am unable to install flowDensity package for cytometry analysis. > >> The > >> error in both 3.0 and 3.1 versions of R (ubuntu 12.04) shows > >> > >> using normal install.packages('flowDensity') and bioconductor > >> installtion, the error message is > >> Warning message: > >> package ?flowDensity? is not available (for R version 3.1.0 beta) > > > > Please show us how you tried to install the package. > > > > The recommended way is: > > > > source('http://bioconductor.org/biocLite.R') > > biocLite('flowDensity') > > > > In order to help us diagnose your problem, please also send the > > output of > > the sessionInfo() and biocinstallRepos() commands. > > > > Dan > > > > > > > > > >> > >> Thanks, > >> Raghu > >> > >> _______________________________________________ > >> Bioconductor mailing list > >> Bioconductor at r-project.org > >> https://stat.ethz.ch/mailman/listinfo/bioconductor > >> Search the archives: > >> http://news.gmane.org/gmane.science.biology.informatics.conductor > >> > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor at r-project.org > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > > -- > Computational Biology / Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N. > PO Box 19024 Seattle, WA 98109 > > Location: Arnold Building M1 B861 > Phone: (206) 667-2793 >
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Josef Spidlen ▴ 140
@josef-spidlen-3720
Last seen 10.2 years ago
I guess I'll step in since I haven't seen a response from Jafar yet... It is my understanding that flowDensity has been submitted to BioConductor quite a while ago, but there is some disagreement about certain design aspects between the main package developer (Jafar) and the package reviewer on the BioConductor side. So this went back and forth a few times, plus Jafar just came back from (a rather long :-) vacation, which means that this still hasn't been resolved. So the package is not in BioConductor (yet), but it is available from the author if someone wants to use it right now. The best way is to email Jafar directly (Jafar Taghiyar, < jafar.taghiyar@gmail.com>). Alternatively (e.g., if he does not respond fast enough), please feel free to email me offline and I can grab the latest version from our internal SVN and just give it to you. We are using flowDensity routinely in our lab so I would say it is ready for production in that sense. Cheers, Josef -- Josef Spidlen, Ph.D. Staff Scientist, Terry Fox Laboratory, BC Cancer Agency, Cancer Research Centre 675 West 10th Avenue, Vancouver, BC, V5Z1L3, Canada Tel. +1 604-675-8000, ex. 7755 > > Message: 1 > Date: Thu, 10 Apr 2014 09:29:45 +0200 > From: Raghu <eraghu@mpi-muenster.mpg.de> > To: Dan Tenenbaum <dtenenba@fhcrc.org> > Cc: bioconductor@r-project.org > Subject: Re: [BioC] installing flowDensity > Message-ID: <53464869.8050306@mpi-muenster.mpg.de> > Content-Type: text/plain; charset=UTF-8; format=flowed > This is the output when installing in R v3.1 beta (ubuntu 12.04) > ================================================= > > source('http://bioconductor.org/biocLite.R') > Bioconductor version 2.13 (BiocInstaller 1.12.0), ?biocLite for help > > biocLite('flowDensity') > BioC_mirror: http://bioconductor.org > Using Bioconductor version 2.13 (BiocInstaller 1.12.0), R version 3.1.0. > Installing package(s) 'flowDensity' > Warning message: > package ?flowDensity? is not available (for R version 3.1.0 beta) > > sessionInfo() > R version 3.1.0 beta (2014-03-28 r65330) > Platform: x86_64-pc-linux-gnu (64-bit) > locale: > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C > [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 > [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 > [7] LC_PAPER=en_US.UTF-8 LC_NAME=C > [9] LC_ADDRESS=C LC_TELEPHONE=C > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > attached base packages: > [1] stats graphics grDevices utils datasets methods base > other attached packages: > [1] BiocInstaller_1.12.0 > loaded via a namespace (and not attached): > [1] tools_3.1.0 > > biocinstallRepos() > BioCsoft > "http://bioconductor.org/packages/2.13/bioc" > BioCann > "http://bioconductor.org/packages/2.13/data/annotation" > BioCexp > "http://bioconductor.org/packages/2.13/data/experiment" > BioCextra > "http://bioconductor.org/packages/2.13/extra" > CRAN > "http://cran.fhcrc.org" > when trying to install in R v3.0 (this is in windows -7) > ================================================= > > > source('http://bioconductor.org/biocLite.R') > Bioconductor version 2.13 (BiocInstaller 1.12.0), ?biocLite for help > > biocLite('flowDensity') > BioC_mirror: http://bioconductor.org > Using Bioconductor version 2.13 (BiocInstaller 1.12.0), R version 3.0.3. > Installing package(s) 'flowDensity' > Warning message: > package ?flowDensity? is not available (for R version 3.0.3) > > sessionInfo() > R version 3.0.3 (2014-03-06) > Platform: i386-w64-mingw32/i386 (32-bit) > locale: > [1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252 > [3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C > [5] LC_TIME=German_Germany.1252 > attached base packages: > [1] stats graphics grDevices utils datasets methods base > other attached packages: > [1] BiocInstaller_1.12.0 > loaded via a namespace (and not attached): > [1] tools_3.0.3 > > biocinstallRepos() > BioCsoft > "http://bioconductor.org/packages/2.13/bioc" > BioCann > "http://bioconductor.org/packages/2.13/data/annotation" > BioCexp > "http://bioconductor.org/packages/2.13/data/experiment" > BioCextra > "http://bioconductor.org/packages/2.13/extra" > CRAN > "http://cran.fhcrc.org" > CRANextra > "http://www.stats.ox.ac.uk/pub/RWin" > > > regards, > Raghu > > > On Thu 10 Apr 2014 07:31:13 AM CEST, Dan Tenenbaum wrote: > > > > > > ----- Original Message ----- > >> From: "Raghu" <eraghu@mpi-muenster.mpg.de> > >> To: bioconductor@r-project.org > >> Sent: Wednesday, April 9, 2014 12:17:46 PM > >> Subject: [BioC] installing flowDensity > >> > >> Dear all, > >> > >> I am unable to install flowDensity package for cytometry analysis. > >> The > >> error in both 3.0 and 3.1 versions of R (ubuntu 12.04) shows > >> > >> using normal install.packages('flowDensity') and bioconductor > >> installtion, the error message is > >> Warning message: > >> package ?flowDensity? is not available (for R version 3.1.0 beta) > > > > Please show us how you tried to install the package. > > > > The recommended way is: > > > > source('http://bioconductor.org/biocLite.R') > > biocLite('flowDensity') > > > > In order to help us diagnose your problem, please also send the output of > > the sessionInfo() and biocinstallRepos() commands. > > > > Dan > > > > > > > > > >> > >> Thanks, > >> Raghu > >> > >> _______________________________________________ > >> Bioconductor mailing list > >> Bioconductor@r-project.org > >> https://stat.ethz.ch/mailman/listinfo/bioconductor > >> Search the archives: > >> http://news.gmane.org/gmane.science.biology.informatics.conductor > >> > > > -- > Raghu Erapaneedi > Max Planck Institute for Molecular Biomedicine > Mammalian Cell Signalling Laboratory > Department of Vascular Cell Biology > Roentgenstr-20 > D-48149 Muenster > Germany > Tel:+49(0)251-70365-223 > > > ------------------------------ > Message: 2 > Date: Thu, 10 Apr 2014 07:27:16 -0700 (PDT) > From: Dan Tenenbaum <dtenenba@fhcrc.org> > To: Raghu <eraghu@mpi-muenster.mpg.de> > Cc: bioconductor@r-project.org > Subject: Re: [BioC] installing flowDensity > Message-ID: <830338663.1497875.1397140036758.JavaMail.root@fhcrc.org> > Content-Type: text/plain; charset=utf-8 > Please see my subsequent email, quoted here: > --- > Martin points out that there is no package called flowDensity. Looks like > there is something called the "flowDensity gating plugin" for openCyto > but I don't know how you install it. You should contact the maintainer of > openCyto (maintainer email address available at > http://bioconductor.org/packages/release/bioc/html/openCyto.html). > --- > Dan > > ----- Original Message ----- > > From: "Raghu" <eraghu@mpi-muenster.mpg.de> > > To: "Dan Tenenbaum" <dtenenba@fhcrc.org> > > Cc: bioconductor@r-project.org > > Sent: Thursday, April 10, 2014 12:29:45 AM > > Subject: Re: [BioC] installing flowDensity > > > > This is the output when installing in R v3.1 beta (ubuntu 12.04) > > ================================================= > > > source('http://bioconductor.org/biocLite.R') > > Bioconductor version 2.13 (BiocInstaller 1.12.0), ?biocLite for help > > > biocLite('flowDensity') > > > > BioC_mirror: http://bioconductor.org > > Using Bioconductor version 2.13 (BiocInstaller 1.12.0), R version > > 3.1.0. > > Installing package(s) 'flowDensity' > > Warning message: > > package ?flowDensity? is not available (for R version 3.1.0 beta) > > > sessionInfo() > > R version 3.1.0 beta (2014-03-28 r65330) > > Platform: x86_64-pc-linux-gnu (64-bit) > > > > locale: > > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C > > [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 > > [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 > > [7] LC_PAPER=en_US.UTF-8 LC_NAME=C > > [9] LC_ADDRESS=C LC_TELEPHONE=C > > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > > > attached base packages: > > [1] stats graphics grDevices utils datasets methods base > > > > other attached packages: > > [1] BiocInstaller_1.12.0 > > > > loaded via a namespace (and not attached): > > [1] tools_3.1.0 > > > biocinstallRepos() > > BioCsoft > > "http://bioconductor.org/packages/2.13/bioc" > > BioCann > > "http://bioconductor.org/packages/2.13/data/annotation" > > BioCexp > > "http://bioconductor.org/packages/2.13/data/experiment" > > BioCextra > > "http://bioconductor.org/packages/2.13/extra" > > CRAN > > "http://cran.fhcrc.org" > > > > when trying to install in R v3.0 (this is in windows -7) > > ================================================= > > > > > > > source('http://bioconductor.org/biocLite.R') > > Bioconductor version 2.13 (BiocInstaller 1.12.0), ?biocLite for help > > > biocLite('flowDensity') > > BioC_mirror: http://bioconductor.org > > Using Bioconductor version 2.13 (BiocInstaller 1.12.0), R version > > 3.0.3. > > Installing package(s) 'flowDensity' > > Warning message: > > package ?flowDensity? is not available (for R version 3.0.3) > > > sessionInfo() > > R version 3.0.3 (2014-03-06) > > Platform: i386-w64-mingw32/i386 (32-bit) > > > > locale: > > [1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252 > > [3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C > > [5] LC_TIME=German_Germany.1252 > > > > attached base packages: > > [1] stats graphics grDevices utils datasets methods base > > > > other attached packages: > > [1] BiocInstaller_1.12.0 > > > > loaded via a namespace (and not attached): > > [1] tools_3.0.3 > > > biocinstallRepos() > > BioCsoft > > "http://bioconductor.org/packages/2.13/bioc" > > BioCann > > "http://bioconductor.org/packages/2.13/data/annotation" > > BioCexp > > "http://bioconductor.org/packages/2.13/data/experiment" > > BioCextra > > "http://bioconductor.org/packages/2.13/extra" > > CRAN > > "http://cran.fhcrc.org" > > CRANextra > > "http://www.stats.ox.ac.uk/pub/RWin" > > > > > > > > regards, > > Raghu > > > > > > > > On Thu 10 Apr 2014 07:31:13 AM CEST, Dan Tenenbaum wrote: > > > > > > > > > ----- Original Message ----- > > >> From: "Raghu" <eraghu@mpi-muenster.mpg.de> > > >> To: bioconductor@r-project.org > > >> Sent: Wednesday, April 9, 2014 12:17:46 PM > > >> Subject: [BioC] installing flowDensity > > >> > > >> Dear all, > > >> > > >> I am unable to install flowDensity package for cytometry analysis. > > >> The > > >> error in both 3.0 and 3.1 versions of R (ubuntu 12.04) shows > > >> > > >> using normal install.packages('flowDensity') and bioconductor > > >> installtion, the error message is > > >> Warning message: > > >> package ?flowDensity? is not available (for R version 3.1.0 beta) > > > > > > Please show us how you tried to install the package. > > > > > > The recommended way is: > > > > > > source('http://bioconductor.org/biocLite.R') > > > biocLite('flowDensity') > > > > > > In order to help us diagnose your problem, please also send the > > > output of > > > the sessionInfo() and biocinstallRepos() commands. > > > > > > Dan > > > > > > > > > > > > > > >> > > >> Thanks, > > >> Raghu > > >> > > >> _______________________________________________ > > >> Bioconductor mailing list > > >> Bioconductor@r-project.org > > >> https://stat.ethz.ch/mailman/listinfo/bioconductor > > >> Search the archives: > > >> http://news.gmane.org/gmane.science.biology.informatics.conductor > > >> > > > > > > > > -- > > Raghu Erapaneedi > > Max Planck Institute for Molecular Biomedicine > > Mammalian Cell Signalling Laboratory > > Department of Vascular Cell Biology > > Roentgenstr-20 > > D-48149 Muenster > > Germany > > Tel:+49(0)251-70365-223 > > > ------------------------------ [[alternative HTML version deleted]]
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