GOSemSim with mgoSim results changed based on the order of input GO terms
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Last seen 10.5 years ago
Is this expected behavior for mgoSim? I am attempting to compare two lists GO terms. Each list was generated in a different species. Thus, I am using the "Wang" method and averaging the results using BMA. I noticed that if the GO term list is re-ordered, then the value in the thousandths decimal place changes (0.00X). I have tried several iterations of this now with the same result. Thanks for any insight you can provide. Matt -- output of sessionInfo(): R version 3.0.2 (2013-09-25) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] C attached base packages: [1] parallel stats graphics grDevices utils datasets methods [8] base other attached packages: [1] GOSemSim_1.20.3 AnnotationDbi_1.24.0 Biobase_2.22.0 [4] BiocGenerics_0.8.0 RSQLite_0.11.4 DBI_0.2-7 [7] Rcpp_0.11.1 loaded via a namespace (and not attached): [1] GO.db_2.10.1 IRanges_1.20.7 stats4_3.0.2 -- Sent via the guest posting facility at bioconductor.org.
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