Dear users, I tried to load minfi package, it has an error message > library(minfi) Loading required package: reshape Error in FUN("expand"[[1L]], ...) : lazy-load database 'P' is corrupt In addition: Warning messages: 1: package ???reshape??? was built under R version 3.1.0 2: In FUN("expand"[[1L]], ...) : restarting interrupted promise evaluation 3: In FUN("expand"[[1L]], ...) : internal error -3 in R_decompress1 After I installed reshape package, it still has the error. Please help to let me know what's it wrong. Thanks a lot -- output of sessionInfo(): > sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] parallel stats graphics grDevices utils datasets methods base other attached packages: [1] lumi_2.14.2 BiocInstaller_1.12.1 VariantAnnotation_1.8.13 Rsamtools_1.14.3 Biostrings_2.30.1 GenomicRanges_1.14.4 [7] XVector_0.2.0 IRanges_1.20.7 ggplot2_0.9.3.1 phyloseq_1.6.1 picante_1.6-2 nlme_3.1-117 [13] ape_3.1-1 ade4_1.6-2 knitr_1.5 vegan_2.0-10 lattice_0.20-29 permute_0.8-3 [19] biom_0.3.12 metagenomeSeq_1.5.47 devtools_1.5 gplots_2.13.0 RColorBrewer_1.0-5 matrixStats_0.8.14 [25] limma_3.18.13 Biobase_2.22.0 BiocGenerics_0.8.0 loaded via a namespace (and not attached): [1] affy_1.40.0 affyio_1.30.0 annotate_1.40.1 AnnotationDbi_1.24.0 base64_1.1 beanplot_1.1 [7] biomaRt_2.18.0 bitops_1.0-6 BSgenome_1.30.0 bumphunter_1.2.0 caTools_1.17 cluster_1.15.2 [13] codetools_0.2-8 colorspace_1.2-4 DBI_0.2-7 dichromat_2.0-0 digest_0.6.4 doRNG_1.6 [19] evaluate_0.5.5 foreach_1.4.2 formatR_0.10 gdata_2.13.3 genefilter_1.44.0 GenomicFeatures_1.14.5 [25] grid_3.0.2 gtable_0.1.2 gtools_3.4.0 httr_0.3 igraph_0.7.1 illuminaio_0.4.0 [31] iterators_1.0.7 itertools_0.1-3 KernSmooth_2.23-12 labeling_0.2 locfit_1.5-9.1 MASS_7.3-32 [37] Matrix_1.1-3 mclust_4.3 memoise_0.2.1 methylumi_2.8.0 mgcv_1.7-29 minfi_1.8.9 [43] multtest_2.18.0 munsell_0.4.2 nleqslv_2.1.1 nor1mix_1.1-4 pkgmaker_0.20 plyr_1.8.1 [49] preprocessCore_1.24.0 proto_0.3-10 R.methodsS3_1.6.1 Rcpp_0.11.1 RCurl_1.95-4.1 registry_0.2 [55] reshape_0.8.5 reshape2_1.4 RJSONIO_1.2-0.2 rngtools_1.2.4 RSQLite_0.11.4 rtracklayer_1.22.7 [61] scales_0.2.4 siggenes_1.36.0 splines_3.0.2 stats4_3.0.2 stringr_0.6.2 survival_2.37-7 [67] tools_3.0.2 whisker_0.3-2 XML_3.95-0.2 xtable_1.7-3 zlibbioc_1.8.0 > -- Sent via the guest posting facility at bioconductor.org.

Looks like your R packages are messed up. Can you do library(reshape) Kasper On Wed, May 7, 2014 at 9:50 AM, guest [guest] <guest@bioconductor.org>wrote: > > Dear users, > > I tried to load minfi package, it has an error message > > > library(minfi) > Loading required package: reshape > Error in FUN("expand"[[1L]], ...) : lazy-load database 'P' is corrupt > In addition: Warning messages: > 1: package ‘reshape’ was built under R version 3.1.0 > 2: In FUN("expand"[[1L]], ...) : restarting interrupted promise evaluation > 3: In FUN("expand"[[1L]], ...) : internal error -3 in R_decompress1 > > After I installed reshape package, it still has the error. > > Please help to let me know what's it wrong. > > Thanks a lot > > > -- output of sessionInfo(): > > > sessionInfo() > R version 3.0.2 (2013-09-25) > Platform: x86_64-apple-darwin10.8.0 (64-bit) > > locale: > [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 > > attached base packages: > [1] parallel stats graphics grDevices utils datasets methods > base > > other attached packages: > [1] lumi_2.14.2 BiocInstaller_1.12.1 > VariantAnnotation_1.8.13 Rsamtools_1.14.3 Biostrings_2.30.1 > GenomicRanges_1.14.4 > [7] XVector_0.2.0 IRanges_1.20.7 ggplot2_0.9.3.1 > phyloseq_1.6.1 picante_1.6-2 nlme_3.1-117 > [13] ape_3.1-1 ade4_1.6-2 knitr_1.5 > vegan_2.0-10 lattice_0.20-29 permute_0.8-3 > [19] biom_0.3.12 metagenomeSeq_1.5.47 devtools_1.5 > gplots_2.13.0 RColorBrewer_1.0-5 matrixStats_0.8.14 > [25] limma_3.18.13 Biobase_2.22.0 BiocGenerics_0.8.0 > > loaded via a namespace (and not attached): > [1] affy_1.40.0 affyio_1.30.0 annotate_1.40.1 > AnnotationDbi_1.24.0 base64_1.1 beanplot_1.1 > [7] biomaRt_2.18.0 bitops_1.0-6 BSgenome_1.30.0 > bumphunter_1.2.0 caTools_1.17 cluster_1.15.2 > [13] codetools_0.2-8 colorspace_1.2-4 DBI_0.2-7 > dichromat_2.0-0 digest_0.6.4 doRNG_1.6 > [19] evaluate_0.5.5 foreach_1.4.2 formatR_0.10 > gdata_2.13.3 genefilter_1.44.0 GenomicFeatures_1.14.5 > [25] grid_3.0.2 gtable_0.1.2 gtools_3.4.0 > httr_0.3 igraph_0.7.1 illuminaio_0.4.0 > [31] iterators_1.0.7 itertools_0.1-3 KernSmooth_2.23-12 > labeling_0.2 locfit_1.5-9.1 MASS_7.3-32 > [37] Matrix_1.1-3 mclust_4.3 memoise_0.2.1 > methylumi_2.8.0 mgcv_1.7-29 minfi_1.8.9 > [43] multtest_2.18.0 munsell_0.4.2 nleqslv_2.1.1 > nor1mix_1.1-4 pkgmaker_0.20 plyr_1.8.1 > [49] preprocessCore_1.24.0 proto_0.3-10 R.methodsS3_1.6.1 > Rcpp_0.11.1 RCurl_1.95-4.1 registry_0.2 > [55] reshape_0.8.5 reshape2_1.4 RJSONIO_1.2-0.2 > rngtools_1.2.4 RSQLite_0.11.4 rtracklayer_1.22.7 > [61] scales_0.2.4 siggenes_1.36.0 splines_3.0.2 > stats4_3.0.2 stringr_0.6.2 survival_2.37-7 > [67] tools_3.0.2 whisker_0.3-2 XML_3.95-0.2 > xtable_1.7-3 zlibbioc_1.8.0 > > > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]