Hi, i have R 1.9.0 under linux. i have downladed Ruuid package and then when i'm trying to install Ruuid: R CMD INSTALL /......../Ruuid_1.4.5.tar.gz * Installing *source* package 'Ruuid' ... creating cache ./config.cache checking for glib-config... no checking how to run the C preprocessor... cc -E checking for /usr/include/unistd.h... yes updating cache ./config.cache creating ./config.status creating src/Makevars ** libs gcc -I/usr/lib/R/include -I/usr/local/include/glib12 -DHAVE_UNISTD_H=1 -D__NO_MATH_INLINES -mieee-fp -fPIC -g -O2 -c Rinit.c -o Rinit.o In file included from Ruuid.h:5, from Rinit.c:1: uuidP.h:24:18: glib.h: No such file or directory In file included from Ruuid.h:5, from Rinit.c:1: uuidP.h:36: error: parse error before "guint32" uuidP.h:36: warning: no semicolon at end of struct or union uuidP.h:37: warning: data definition has no type or storage class uuidP.h:38: error: parse error before "time_hi_and_version" uuidP.h:38: warning: data definition has no type or storage class uuidP.h:39: error: parse error before "clock_seq" uuidP.h:39: warning: data definition has no type or storage class uuidP.h:40: error: parse error before "node" uuidP.h:40: warning: data definition has no type or storage class uuidP.h:41: error: parse error before '}' token make: *** [Rinit.o] Error 1 ERROR: compilation failed for package 'Ruuid' ** Removing '/usr/local/lib/R/site-library/Ruuid' what can i do? -- Dott. Alberto Goldoni Lab. Genetica Medica S.Orsola-Malpighi Hospital Via Massarenti n.9 40138 - BOLOGNA (BO) - ITALY Mobile Phone: +39 3384145970 Fax: +39 051 636 4004 http://www.eurogene.org/ http://www.lagem.it

As it says, you do not seem to have glib installed (or at least R is unable to find the headers), so you need to install that - and how you do that depends on your flavor of Linux... Best wishes, Robert On Mon, Sep 06, 2004 at 02:35:55PM +0200, alberto goldoni wrote: > Hi, i have R 1.9.0 under linux. > i have downladed Ruuid package and then when i'm trying to install Ruuid: > R CMD INSTALL /......../Ruuid_1.4.5.tar.gz > * Installing *source* package 'Ruuid' ... > creating cache ./config.cache > checking for glib-config... no > checking how to run the C preprocessor... cc -E > checking for /usr/include/unistd.h... yes > updating cache ./config.cache > creating ./config.status > creating src/Makevars > ** libs > gcc -I/usr/lib/R/include -I/usr/local/include/glib12 -DHAVE_UNISTD_H=1 > -D__NO_MATH_INLINES -mieee-fp -fPIC -g -O2 -c Rinit.c -o Rinit.o > In file included from Ruuid.h:5, > from Rinit.c:1: > uuidP.h:24:18: glib.h: No such file or directory > In file included from Ruuid.h:5, > from Rinit.c:1: > uuidP.h:36: error: parse error before "guint32" > uuidP.h:36: warning: no semicolon at end of struct or union > uuidP.h:37: warning: data definition has no type or storage class > uuidP.h:38: error: parse error before "time_hi_and_version" > uuidP.h:38: warning: data definition has no type or storage class > uuidP.h:39: error: parse error before "clock_seq" > uuidP.h:39: warning: data definition has no type or storage class > uuidP.h:40: error: parse error before "node" > uuidP.h:40: warning: data definition has no type or storage class > uuidP.h:41: error: parse error before '}' token > make: *** [Rinit.o] Error 1 > ERROR: compilation failed for package 'Ruuid' > ** Removing '/usr/local/lib/R/site-library/Ruuid' > > > what can i do? > > -- > Dott. Alberto Goldoni > Lab. Genetica Medica > S.Orsola-Malpighi Hospital > Via Massarenti n.9 > 40138 - BOLOGNA (BO) - ITALY > Mobile Phone: +39 3384145970 > Fax: +39 051 636 4004 > http://www.eurogene.org/ > http://www.lagem.it > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor -- +--------------------------------------------------------------------- ------+ | Robert Gentleman phone : (617) 632-5250 | | Associate Professor fax: (617) 632-2444 | | Department of Biostatistics office: M1B20 | | Harvard School of Public Health email: rgentlem@jimmy.harvard.edu | +--------------------------------------------------------------------- ------+

On Tuesday 07 September 2004 02:55, you wrote: i use debian and wtih apt-cache search glib-devel i obtain no results there is no package called glib-devel > alberto goldoni wrote: > > Hi, i have R 1.9.0 under linux. > > i have downladed Ruuid package and then when i'm trying to install Ruuid: > > R CMD INSTALL /......../Ruuid_1.4.5.tar.gz > > * Installing *source* package 'Ruuid' ... > > creating cache ./config.cache > > checking for glib-config... no > > checking how to run the C preprocessor... cc -E > > checking for /usr/include/unistd.h... yes > > updating cache ./config.cache > > creating ./config.status > > creating src/Makevars > > ** libs > > gcc -I/usr/lib/R/include -I/usr/local/include/glib12 -DHAVE_UNISTD_H=1 > > -D__NO_MATH_INLINES -mieee-fp -fPIC -g -O2 -c Rinit.c -o Rinit.o > > In file included from Ruuid.h:5, > > from Rinit.c:1: > > uuidP.h:24:18: glib.h: No such file or directory > > In file included from Ruuid.h:5, > > from Rinit.c:1: > > uuidP.h:36: error: parse error before "guint32" > > uuidP.h:36: warning: no semicolon at end of struct or union > > uuidP.h:37: warning: data definition has no type or storage class > > uuidP.h:38: error: parse error before "time_hi_and_version" > > uuidP.h:38: warning: data definition has no type or storage class > > uuidP.h:39: error: parse error before "clock_seq" > > uuidP.h:39: warning: data definition has no type or storage class > > uuidP.h:40: error: parse error before "node" > > uuidP.h:40: warning: data definition has no type or storage class > > uuidP.h:41: error: parse error before '}' token > > make: *** [Rinit.o] Error 1 > > ERROR: compilation failed for package 'Ruuid' > > ** Removing '/usr/local/lib/R/site-library/Ruuid' > > > > > > what can i do? > > have the include files for glib installed (you do not tell what > distribution you are using, so I can not help you further... > if rpm-based, something like glib-devel would do it I think...) -- Dott. Alberto Goldoni Lab. Genetica Medica S.Orsola-Malpighi Hospital Via Massarenti n.9 40138 - BOLOGNA (BO) - ITALY Mobile Phone: +39 3384145970 Fax: +39 051 636 4004 http://www.eurogene.org/ http://www.lagem.it