I am having problem in updating bioconductor packages, running on WindowXP, R1.91 source("http://www.bioconductor.org/getBioC.R <http: www.bioconductor.org="" getbioc.r=""> ") > > getBioC(develOK=TRUE) Running getBioC version 1.2.64.... If you encounter problems, first make sure that you are running the latest version of getBioC() which can be found at: www.bioconductor.org/getBioC.R <http: www.bioconductor.org="" getbioc.r=""> Please direct any concerns or questions to bioconductor@stat.math.ethz.ch <mailto:bioconductor@stat.math.ethz.ch> . [1] "Installing reposTools ..." Loading required package: reposTools Warning message: package reposTools was built under R version 2.0.0 Error in grep("[[:alpha:]]", vers) : couldn't find function "getRversion" > Narendra [[alternative HTML version deleted]]

On Sun, Sep 12, 2004 at 05:11:41PM +0100, Kaushik, Narendra K wrote: > I am having problem in updating bioconductor packages, running on WindowXP, R1.91 > > source("http://www.bioconductor.org/getBioC.R <http: www.bioconductor.org="" getbioc.r=""> ") > > > > getBioC(develOK=TRUE) ^^^^^^^^^^^^^^^^^^^^^^ As is indicated on the web page, and has been stated here many times, you cannot use the devel version of Bioconductor with the release version of R. You must either use the devel version of R with the devel version of Bioconductor or use the release version of R with the relase version of Bioconductor. Please read the instructions on the download page. Robert > Running getBioC version 1.2.64.... > If you encounter problems, first make sure that > you are running the latest version of getBioC() > which can be found at: www.bioconductor.org/getBioC.R <http: www.bioconductor.org="" getbioc.r=""> > Please direct any concerns or questions to bioconductor@stat.math.ethz.ch <mailto:bioconductor@stat.math.ethz.ch> . > [1] "Installing reposTools ..." > Loading required package: reposTools > Warning message: > package reposTools was built under R version 2.0.0 > Error in grep("[[:alpha:]]", vers) : couldn't find function "getRversion" > > > > Narendra > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor -- +--------------------------------------------------------------------- ------+ | Robert Gentleman phone : (617) 632-5250 | | Associate Professor fax: (617) 632-2444 | | Department of Biostatistics office: M1B20 | | Harvard School of Public Health email: rgentlem@jimmy.harvard.edu | +--------------------------------------------------------------------- ------+

You cannot use develOK=TRUE if you are not running R-2.0.0 alpha. You either need to stick with the release versions or upgrade your R version. Best, Jim James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 >>> "Kaushik, Narendra K" <n.kaushik@imperial.ac.uk> 09/12/04 12:11 PM >>> I am having problem in updating bioconductor packages, running on WindowXP, R1.91 source("http://www.bioconductor.org/getBioC.R <http: www.bioconductor.org="" getbioc.r=""> ") > > getBioC(develOK=TRUE) Running getBioC version 1.2.64.... If you encounter problems, first make sure that you are running the latest version of getBioC() which can be found at: www.bioconductor.org/getBioC.R <http: www.bioconductor.org="" getbioc.r=""> Please direct any concerns or questions to bioconductor@stat.math.ethz.ch <mailto:bioconductor@stat.math.ethz.ch> . [1] "Installing reposTools ..." Loading required package: reposTools Warning message: package reposTools was built under R version 2.0.0 Error in grep("[[:alpha:]]", vers) : couldn't find function "getRversion" > Narendra [[alternative HTML version deleted]] _______________________________________________ Bioconductor mailing list Bioconductor@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor

> I am having problem in updating bioconductor packages, running on > WindowXP, R1.91 > > getBioC(develOK=TRUE) You need to use R-devel (aka R-2.0.0) if you're setting 'develOK=TRUE'.