> getBioC(develOK=TRUE)
Running getBioC version 1.2.64....
If you encounter problems, first make sure that
you are running the latest version of getBioC()
which can be found at: www.bioconductor.org/getBioC.R
Please direct any concerns or questions to
bioconductor@stat.math.ethz.ch.
Please select an installation directory:
1:/usr/local/lib/R/site-library
2:/usr/lib/R/site-library
3:/usr/lib/R/library
Selection: 2
Loading required package: reposTools
Error in grep("[[:alpha:]]", vers) : couldn't find function
"getRversion"
WHY?????????
HOW CAN I INSTALL DEVEL PACKAGE????
--
Dott. Goldoni Alberto
Alberto Goldoni wrote:
>>getBioC(develOK=TRUE)
>
> Running getBioC version 1.2.64....
> If you encounter problems, first make sure that
> you are running the latest version of getBioC()
> which can be found at: www.bioconductor.org/getBioC.R
>
> Please direct any concerns or questions to
bioconductor@stat.math.ethz.ch.
>
> Please select an installation directory:
> 1:/usr/local/lib/R/site-library
> 2:/usr/lib/R/site-library
> 3:/usr/lib/R/library
> Selection: 2
> Loading required package: reposTools
> Error in grep("[[:alpha:]]", vers) : couldn't find function
"getRversion"
>
>
>
> WHY?????????
> HOW CAN I INSTALL DEVEL PACKAGE????
As has been noted several times in the past few days, you need to have
the devel version of R installed in order to install the devel version
of BioC.
--
James W. MacDonald
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
On Tue, Sep 14, 2004 at 11:39:42AM -0400, James W. MacDonald wrote:
> Alberto Goldoni wrote:
> >>getBioC(develOK=TRUE)
<snip>
> >WHY?????????
> >HOW CAN I INSTALL DEVEL PACKAGE????
>
> As has been noted several times in the past few days, you need to
have
> the devel version of R installed in order to install the devel
version
> of BioC.
Based on this, what about a line in getBioC, like
if(develOK)
cat("You have chosen the devel version of Bioconductor. Please note
that this requires the devel version of R.\n")
Hmm come to think of it, I guess this might be checked automatically
in
the next version, since it seems that R 2.0 will have a function
echoing
the version.
--
Kasper Daniel Hansen, Research Assistant
Department of Biostatistics, University of Copenhagen
> Hmm come to think of it, I guess this might be checked automatically
in
> the next version, since it seems that R 2.0 will have a function
echoing
> the version.
I actually just updated the check in getBioC for minimum versions such
that devel requires >= 2.0 (and release 1.4 requires >= 1.9).
