Hello all, I'm using R 1.9.1 Patched (2004-09-07) plus Bioconductor 1.4 on a solaris8/sun4u system building with gcc 3.4.0 and I'm having problems with the release version (1.2.2) of RBGL. (I've been able to get all other packages loaded). First is the previously reported issue with the z option of tar, but even with that fixed, I get the errors below. Versions 1.2.5 and the latest 1.3.7 work (or at least install fine), but as has been pointed out many times, one should not use devel versions of Bioconductor modules with non-devel versions of R. So, is use of one or the other devel version OK here? If not, is there a quick patch to the 1.4 release that could be done, or a workaround for 1.2.2? Thanks, -Steve kobuk% /prod/ddm/tools/R/R-1.9.1_Bioconductor-1.4/bin/R CMD INSTALL RBGL * Installing *source* package 'RBGL' ... untarring boost include tree... ** libs g++ -I/prod/ddm/tools/R/R-1.9.1_Bioconductor-1.4/lib/R/include -I/prod/ddm/usr/local/include -I/prod/ddm/usr/local/include/glib-2.0 -I/prod/ddm/usr/local/lib/glib-2.0/include -I/mpi/solaris8/usr/include -I/mpi/usr/include -I/usr/local/include -IboostIncl -ftempl ate-depth-30 -g -fPIC -g -O2 -c interfaces.cpp -o interfaces.o In file included from boostIncl/boost/config.hpp:35, from RBGL.h:4, from interfaces.cpp:1: boostIncl/boost/config/compiler/gcc.hpp:66:7: warning: #warning "Unknown compiler version - please run the configure tests and repor t the results" In file included from boostIncl/boost/graph/adjacency_list.hpp:48, from RBGL.h:13, from interfaces.cpp:1: boostIncl/boost/graph/detail/edge.hpp:99: error: `std::ostream' is not a template boostIncl/boost/graph/detail/edge.hpp:100: error: `std::ostream' is not a template In file included from boostIncl/boost/graph/dijkstra_shortest_paths.hpp:39, from RBGL.h:16, from interfaces.cpp:1: boostIncl/boost/pending/mutable_queue.hpp: In member function `bool boost::mutable_queue<indexedtype, randomaccesscontainer,="" comp,="" i="" d="">::test()': boostIncl/boost/pending/mutable_queue.hpp:131: error: `is_heap' is not a member of `std' In file included from RBGL.h:24, from interfaces.cpp:1: boostIncl/boost/graph/strong_components.hpp: In function `typename boost::property_traits<colormap>::value_type boost::kosaraju_stro ng_components(Graph&, ComponentsMap, FinishTime, ColorMap)': boostIncl/boost/graph/strong_components.hpp:333: error: `f' undeclared (first use this function) boostIncl/boost/graph/strong_components.hpp:333: error: (Each undeclared identifier is reported only once for each function it appea rs in.) make: *** [interfaces.o] Error 1 ERROR: compilation failed for package 'RBGL' ** Removing '/prod/ddm/tools/R/R-1.9.1_Bioconductor-1.4/lib/R/library/RBGL' ***************************************************************** Steve Roels, Ph.D. Senior Scientist I Computational Biology Millennium Pharmaceuticals, Inc. Phone: 617.761.6820 640 Memorial Drive FAX: 617.577.3555 Cambridge, MA 02139-4815 Email: steven.roels@mpi.com ***************************************************************** This e-mail, including any attachments, is a confidential business communication, and may contain information that is confidential, proprietary and/or privileged. This e-mail is intended only for the individual(s) to whom it is addressed, and may not be saved, copied, printed, disclosed or used by anyone else. If you are not the(an) intended recipient, please immediately delete this e-mail from your computer system and notify the sender. Thank you.