how to fetch GO categories from Chinese hamster genome
0
1
Entering edit mode
@upendra-kumar-devisetty-5614
Last seen 10.2 years ago
Hi, I have been trying to generate GO category table for Chinese hamster genome using getgo function in goseq package. Even though chinese hamster is said to be included in the supportedGenomes() function of goseq, i am having trouble generating the GO category table. Does anybody have experience do this. Here is what i have trying without much success... genes <- c("EGV95676", "EGW04231", "EGV99641") # example gene list getgo(genes, "criGri1", "ensGene") And i get this error - Error in library(paste(orgstring, "db", sep = "."), character.only = TRUE) : there is no package called ?NA.db? ------------------------------------------------- Upendra Kumar Devisetty, Ph.D Postdoctoral Scholar Dept. of Plant Biology, UC Davis Davis, CA 95616 [[alternative HTML version deleted]]
GO Category goseq • 1.3k views
ADD COMMENT

Login before adding your answer.

Traffic: 535 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6