Entering edit mode
SAURIN
★
1.1k
@saurin-799
Last seen 10.2 years ago
Hi,
I have attached GO graph with MF ontology, that I got
it for my Knock-out and Wilde Type samples.
How should I go for displaying GOTerm on top EACH of
Pie chart NODE? I can display GOID but I would like to
have GOTerm. If anyone has done this before..plz let
me know.
below is code:
if(require(Rgraphviz)){
opar = par(xpd = NA)
plotPieChart <- function(curPlot,counts,main) {
renderNode <- function(x) {
force(x)
y <- x * 400 + 1
function(node,ur,attrs = list(),radConv = 1) {
nodeCenter <- getNodeCenter(node)
pieGlyph(y,xpos = getX(nodeCenter),ypos =
getY(nodeCenter),
radius = getNodeRW(node),col =
c("pink","green"))
drawTxtLabel(txtLabel(node),getX(nodeCenter),getY(nodeCenter))
}
}
drawing <- vector(mode = "list",length =
nrow(counts));
for(i in 1:length(drawing)){
drawing[[i]] <- renderNode(counts[i,])
}
if(missing(main))
main = "GO: Molecular Function : Mouse Embryo
Fibroblast Pie Chart Plot"
plot(curPlot,drawNode = drawing,main = main)
legend(300,65,legend = c("KO","WT"), fill =
c("pink","green"))
}
plotPieChart(pgLayoutMF,ctmat)
par(opar)
}
thanks
Saurin
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