On Mon, Oct 11, 2004 at 02:18:26PM -0400, Saurin D. Jani wrote: > Hi BioC, > > I am using R-2.0 on Fedora Core 2 LINUX. I went to Bioconductor and I could not > find latest GO verstion, it has only GO_1.5.1.tar.gz. > > > getRversion() > [1] '2.0.0' > > > library(annaffy,warn.conflicts = FALSE); > Error: package 'GO' 1.5.1 is loaded, but >= 1.6.0 is required by 'annaffy' > > I want to get GOALLLOCUSID and I am trying to get new version of GO and I could > not find it. Please use reposTools to obtain packages.. library(reposTools) install.packages2("GO", develOK=TRUE) should get 1.6.4, which is the current vesrion on the devel arm. > > > GOLocmap<-mget(names(myGOCC$intCounts),GOALLLOCUSID); > Error in mget(names(myGOCC$intCounts), GOALLLOCUSID) : > Object "GOALLLOCUSID" not found > > When I do: > > > update.packages2(GO,develOK = TRUE); > Note: argument `lib' is missing: using /usr/local/lib/R/library > Note: You did not specify a download type. Using a default value of: Source > This will be fine for almost all users > > Error in match(pkgs, libPkgs) : match requires vector arguments Yes, and there the manual page is pretty explicit. > > > Please ,let me know if anyone did this before? > > Thank you, > Saurin Jani > > > -- > |------------------------------------------------ > | Bioinformatician > | > | Department of Cell Biology and Anatomy > | Medical University of South Carolina (MUSC) > | 173 Ashley Ave > | Charleston,SC - 29407 (US) > | > | Email: jani@musc.edu > | Phone: (843)792-5483 > |------------------------------------------------ > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor -- +--------------------------------------------------------------------- ------+ | Robert Gentleman phone : (617) 632-5250 | | Associate Professor fax: (617) 632-2444 | | Department of Biostatistics office: M1B20 | | Harvard School of Public Health email: rgentlem@jimmy.harvard.edu | +--------------------------------------------------------------------- ------+

Thank you Dr. Gentleman, I have it now. I have installed all over again develOK = TRUE . Thank you, Saurin Jani Quoting Robert Gentleman <rgentlem@jimmy.harvard.edu>: > On Mon, Oct 11, 2004 at 02:18:26PM -0400, Saurin D. Jani wrote: > > Hi BioC, > > > > I am using R-2.0 on Fedora Core 2 LINUX. I went to Bioconductor and I could > not > > find latest GO verstion, it has only GO_1.5.1.tar.gz. > > > > > getRversion() > > [1] '2.0.0' > > > > > library(annaffy,warn.conflicts = FALSE); > > Error: package 'GO' 1.5.1 is loaded, but >= 1.6.0 is required by > 'annaffy' > > > > I want to get GOALLLOCUSID and I am trying to get new version of GO and I > could > > not find it. > > Please use reposTools to obtain packages.. > > library(reposTools) > install.packages2("GO", develOK=TRUE) > > should get 1.6.4, which is the current vesrion on the devel arm. > > > > > > GOLocmap<-mget(names(myGOCC$intCounts),GOALLLOCUSID); > > Error in mget(names(myGOCC$intCounts), GOALLLOCUSID) : > > Object "GOALLLOCUSID" not found > > > > When I do: > > > > > update.packages2(GO,develOK = TRUE); > > Note: argument `lib' is missing: using /usr/local/lib/R/library > > Note: You did not specify a download type. Using a default value of: > Source > > This will be fine for almost all users > > > > Error in match(pkgs, libPkgs) : match requires vector arguments > > Yes, and there the manual page is pretty explicit. > > > > > > > > Please ,let me know if anyone did this before? > > > > Thank you, > > Saurin Jani > > > > > > -- > > |------------------------------------------------ > > | Bioinformatician > > | > > | Department of Cell Biology and Anatomy > > | Medical University of South Carolina (MUSC) > > | 173 Ashley Ave > > | Charleston,SC - 29407 (US) > > | > > | Email: jani@musc.edu > > | Phone: (843)792-5483 > > |------------------------------------------------ > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor@stat.math.ethz.ch > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > -- > +------------------------------------------------------------------- --------+ > | Robert Gentleman phone : (617) 632-5250 > | > | Associate Professor fax: (617) 632-2444 > | > | Department of Biostatistics office: M1B20 > | > | Harvard School of Public Health email: rgentlem@jimmy.harvard.edu > | > +------------------------------------------------------------------- --------+ > -- |------------------------------------------------ | Bioinformatician | | Department of Cell Biology and Anatomy | Medical University of South Carolina (MUSC) | 173 Ashley Ave | Charleston,SC - 29407 (US) | | Email: jani@musc.edu | Phone: (843)792-5483 |------------------------------------------------