Are there any plans to incorporate Affymetrix's new PLIER algorithm in Bionconductor? Thanks, Dick ********************************************************************** ********* Richard P. Beyer, Ph.D. University of Washington Tel.:(206) 616 7378 Env. & Occ. Health Sci. , Box 354695 Fax: (206) 685 4696 4225 Roosevelt Way NE, # 100 Seattle, WA 98105-6099 http://depts.washington.edu/ceeh/ServiceCores/FC5/FC5.html

Dick Beyer wrote: > Are there any plans to incorporate Affymetrix's new PLIER algorithm in > Bionconductor? Yes. Crispin Miller is working to incorporate the PLIER C++ code into a small package that can be called from affy. > > Thanks, > Dick > ******************************************************************** *********** > > Richard P. Beyer, Ph.D. University of Washington > Tel.:(206) 616 7378 Env. & Occ. Health Sci. , Box 354695 > Fax: (206) 685 4696 4225 Roosevelt Way NE, # 100 > Seattle, WA 98105-6099 > http://depts.washington.edu/ceeh/ServiceCores/FC5/FC5.html > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor -- James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109

yes. Affymetrix, via Mike Lelivelt, has been nice enough to make their C++ code open source and have offered technical assistance. crispin (cc-ed) will be creating a R package that implements PLIER for AffyBatches. Because of license issues it will be in its own package. it will not be included in the affy package. We will keep you updated via this mailing list. -rafael On Mon, 18 Oct 2004, Dick Beyer wrote: > Are there any plans to incorporate Affymetrix's new PLIER algorithm in Bionconductor? > > Thanks, > Dick > ******************************************************************** *********** > Richard P. Beyer, Ph.D. University of Washington > Tel.:(206) 616 7378 Env. & Occ. Health Sci. , Box 354695 > Fax: (206) 685 4696 4225 Roosevelt Way NE, # 100 > Seattle, WA 98105-6099 > http://depts.washington.edu/ceeh/ServiceCores/FC5/FC5.html > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor >