DiffBind fold enrichment values
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robertacar • 0
@robertacar-7272
Last seen 9.8 years ago
Italy

Hi,

I'm using DiffBind to analyze a set of ChIP sequencing data. For each sample, I have three biological replicates. I performed the ChIP calling analysis using SICER.  Now I'm interested in performing an overlapping analysis using the three biological replicates. In the SICER output there is an enrichment value for each peak (this means an enrichment respect to the input). Is there a way to have in the dba.overlap output a mean fold enrichment value for each common peak? This is just to identify which are the most enriched common peaks. 

fold enrichment values using DiffBind • 1.3k views
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