Wrong version of g77---you probably have the fink version (which does not work properly). The version you need is at hpc.sourceforge.net, please check the R Mac OS X FAQ for further information. On Nov 5, 2004, at 7:31 PM, Nicholas Lewin-Koh wrote: > Hi, > It looks like the fortran libraries are not being found or there is a > problem with your > gcc install. The error message is telling you when the shared library > is > being built > the linker can't find the necessary libraries. I don't work on a mac > so I won't be too much help, But it does not look like the problem is > hexbin. > > Nicholas > > > On Fri, 5 Nov 2004 10:35:35 -0500, "ulas karaoz" <ulask@bu.edu> said: >> Hi, >> The problem seems to be specific to MAC OS 10. >> I tried to install it on command line in Unix, no problem. >> In MACOS 10.3.5, trying to install it on command line gave me the >> following error: >> >> :~/Desktop ul$ R CMD INSTALL hexbin_1.1-4.tar.gz >> * Installing *source* package 'hexbin' ... >> ** libs >> g77 -fno-common -g -O2 -c hbin.f -o hbin.o >> g77 -fno-common -g -O2 -c hcell.f -o hcell.o >> g77 -fno-common -g -O2 -c herode.f -o herode.o >> g77 -fno-common -g -O2 -c hsm.f -o hsm.o >> gcc -bundle -flat_namespace -undefined suppress -L/usr/local/lib -o >> hexbin.so hbin.o hcell.o herode.o hsm.o -L/usr/local/lib >> -L/usr/local/lib/gcc/powerpc-apple-darwin6.6/3.4 >> -L/usr/local/lib/gcc/powerpc-apple-darwin6.6/3.4/../../.. -lfrtbegin >> -lg2c -lSystem -lcc_dynamic -framework R >> ld: warning -L: directory name >> (/usr/local/lib/gcc/powerpc-apple-darwin6.6/3.4) does not exist >> ld: warning -L: directory name >> (/usr/local/lib/gcc/powerpc-apple-darwin6.6/3.4/../../..) does not >> exist >> ld: can't locate file for: -lfrtbegin >> make: *** [hexbin.so] Error 1 >> ERROR: compilation failed for package 'hexbin' >> ** Removing >> '/Library/Frameworks/R.framework/Versions/1.9.1/Resources/library/ >> hexbin' >> >> >> >> On Nov 5, 2004, at 9:06 AM, Nicholas Lewin-Koh wrote: >> >>> Hi >>> Can you try on the command line in your unix shell >>> % R CMD INSTALL hexbin_1.1-4.tar.gz >>> >>> And let us know what the error messages are? I need to know if it is >>> a >>> fortran problem, R code , examples documentation, ..... >>> There are a gizillion reasons why it could fail without more to go on >>> it >>> is hard to help. >>> >>> Nicholas >>> >>> >>>> ulas wrote: >>> I run R on MACOSX, and i have tried to install it from source local >>> package file (tarball) that i have downloaded from >>> >>> The only error message i am getting is: >>>> install.from.file() >>> npackage installation failed >>> >>> I am sure that the tarball i have downloaded was complete. >>> I have tried to unzip/untar it and have tried to do it from a local >>> source directory, it failed as well. >>> thanks. >>> >>> On Nov 4, 2004, at 12:56 PM, Robert Gentleman wrote: >>> >>>> On Thu, Nov 04, 2004 at 12:51:20PM -0500, ulas karaoz wrote: >>>>> Hi, >>>>> Did anyone successfully installed the hexbin 1.1-4 at >>>>> >>>>> >>> http://www.bioconductor.org/repository/devel/package/Source/ >>> hexbin_1.1 >>>>> -4.tar.gz >>>>> >>>>> for some reason, it fails for me. >>>> >>>> In which of the several million different possible ways? It would >>>> help if you 1) read the posting guide and 2) provided a proper bug >>>> report. >>>> >>>> >>>>> What is the problem with the old version, 1.0.10? >>>>> thanks. >>>>> >>>>> -------------------------------------------- >>>>> Ulas Karaoz >>>>> Boston University >>>>> Ph.D.Student in Bioinformatics >>>>> zlab.bu.edu >>>>> >>>>> _______________________________________________ >>>>> Bioconductor mailing list >>>>> Bioconductor@stat.math.ethz.ch >>>>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>>> >>>> -- >>>> >>> +-------------------------------------------------------------------- >>> -- >>>> -----+ >>>> | Robert Gentleman phone : (617) >>> 632-5250 >>>> | >>>> | Associate Professor fax: (617) >>> 632-2444 >>>> | >>>> | Department of Biostatistics office: >>> M1B20 >>>> | >>>> | Harvard School of Public Health email: >>> rgentlem@jimmy.harvard.edu >>>> | >>>> >>> +-------------------------------------------------------------------- >>> -- >>>> -----+ >>>> >>> -------------------------------------------- >>> Ulas Karaoz >>> Boston University >>> Ph.D.Student in Bioinformatics >>> zlab.bu.edu >>> >>> >>> >> -------------------------------------------- >> Ulas Karaoz >> Boston University >> Ph.D.Student in Bioinformatics >> zlab.bu.edu >> > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > --- Byron Ellis (ellis@stat.harvard.edu) "Oook" -- The Librarian