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I am using tweeDEseq to look at differential expression between two genotypes. I would like to compare genotypes using litter as a covariate using tweeDEglm; however, I am having trouble implementing this.
Would this be the correct approach to compare genotype using litter as a covariate?
> resPTglm <- tweeDEglm(~litter + genotype, counts = countData)
Thanks!