hi, I am trying to run the WGCNA R package which is doing gene co-expression analysis . But it is failing with an error saying package "proto" was built before R 3.0.0: please re-install. I am using R-3.2.0 i386 (32 bits win). Another thing that I noted is that I am not getting the WGCNA package under "Install packages". I downloaded WGCNA_1.46.zip file from http://labs.genetics.ucla.edu/horvath/htdocs/CoexpressionNetwork/Rpackages/WGCNA/ and unpacked it unsuccessfully under the default R win-library. I added some more repositories but that did not help. Any suggestions will be highly appreciated.
> source("http://bioconductor.org/biocLite.R")
Bioconductor version 3.1 (BiocInstaller 1.18.2), ?biocLite for help
> biocLite("impute")
BioC_mirror: http://bioconductor.org
Using Bioconductor version 3.1 (BiocInstaller 1.18.2), R version 3.2.0.
Installing package(s) ‘impute’
trying URL 'http://bioconductor.org/packages/3.1/bioc/bin/windows/contrib/3.2/impute_1.42.0.zip'
Content type 'application/zip' length 1339419 bytes (1.3 MB)
downloaded 1.3 MB
package ‘impute’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\JX\AppData\Local\Temp\RtmpErxa44\downloaded_packages
> install.packages("WGCNA")
also installing the dependency ‘survival’
trying URL 'http://mirror.bjtu.edu.cn/cran/bin/windows/contrib/3.2/survival_2.38-1.zip'
Content type 'application/octet-stream' length 4595116 bytes (4.4 MB)
downloaded 4.4 MB
trying URL 'http://mirror.bjtu.edu.cn/cran/bin/windows/contrib/3.2/WGCNA_1.46.zip'
Content type 'application/zip' length 2168735 bytes (2.1 MB)
downloaded 2.1 MB
package ‘survival’ successfully unpacked and MD5 sums checked
Warning: cannot remove prior installation of package ‘survival’
package ‘WGCNA’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\JX\AppData\Local\Temp\RtmpErxa44\downloaded_packages
> library(WGCNA)
Error : package ‘proto’ was built before R 3.0.0: please re-install it
Error: package or namespace load failed for ‘WGCNA’
