Dear all,
I have a problem with the PSICQUIC package while mapping gene name synonyms. Here are the command lines :
# data fetching
tbl.big <- PSICQUIC::interactions(psicquic, species="9606",provider=DB, type="direct interaction”)
#mapping
idMapper <- IDMapper("9606")
tbl.big.2 <- addGeneInfo(idMapper,tbl.big)
However, the last step now fails with the message:
Error in getBM(filters = filter, values = uniprots, attributes = columns, :
Invalid attribute(s): uniprot_swissprot_accession
Please use the function 'listAttributes' to get valid attribute names
I cannot figure out what had changed, since this was working well before, and since the example provided in the vignette is also fine...
Thanks for your help
Anaïs