Hi all, 

Is it possible to somehow extract from the dexseq object coordinates of one exon before and one exon after the differentially expressed exon?

Thanks, 

Gosia

Sure, you can extract the genomic coordinates by doing.

rowRanges(dxd)

then you can first select the indexes of the rows that are detected to be differentially used (as well as the upstream and downstream exons!)

Alejandro