Hi, I am new user of bioconductor. I am wondering anyone would provide some tutorial information or sample code to show the common procedure for analysis of cDNA microarray using bioconductor. For example, a very typical two group comparison, control&treatement. Really appreciate all kinds of information! Yanqin --------------------------------- All your favorites on one personal page – Try My Yahoo! [[alternative HTML version deleted]]

Hi, http://bioinf.wehi.edu.au/limma/ Linear Models for Microarray Data (LIMMA) you will find common procedure and which is very useful. Go to users Guide. Thank you, Saurin -- |------------------------------------------------ | Saurin Jani | Bioinformatician | | Department of Cell Biology and Anatomy | Medical University of South Carolina (MUSC) | 173 Ashley Ave | Charleston,SC - 29407 (US) | | Email: jani@musc.edu | Phone: (843)792-5483 |------------------------------------------------ Quoting Yanqin Yang <yanqin_yang@yahoo.com>: > > Hi, > > > > I am new user of bioconductor. I am wondering anyone would provide some > tutorial information or sample code to show the common procedure for analysis > of cDNA microarray using bioconductor. For example, a very typical two group > comparison, control&treatement. > > > > Really appreciate all kinds of information! > > > > Yanqin > > > > --------------------------------- > > All your favorites on one personal page ? Try My Yahoo! > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor >

There are numerous packages of interest. I find limma (http://bioinf.wehi.edu.au/limma/) quite useful. It has a great user manual. Try looking at it. Sean On Dec 15, 2004, at 12:53 PM, Yanqin Yang wrote: > > Hi, > > > > I am new user of bioconductor. I am wondering anyone would provide > some tutorial information or sample code to show the common procedure > for analysis of cDNA microarray using bioconductor. For example, a > very typical two group comparison, control&treatement. > > > > Really appreciate all kinds of information! > > > > Yanqin > > > > --------------------------------- > > All your favorites on one personal page - Try My Yahoo! > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor