Entering edit mode
Josephine.Liang@uchsc.edu
▴
60
@josephinelianguchscedu-508
Last seen 10.2 years ago
Hi, Robert and Saurin;
In the release 1.5, I find the KEGGSOAP, RBGL and Rgraphiviz packages,
but not KEGG? Any pointers
Thanks
Josephine
Saurin D. Jani wrote:
>Hi,
>
>Regarding Pathway analysis:
>
>In bioconductor when I load: library(KEGG)
>
>I can do this:
>kegg <- as.list(rae230aPATH2PROBE);
>
>and I can generate heatmap of pathway probes which are involved in my
DEgenes
>so, I can see which genes are up and down in perticular pathway.
>
>how can I use interaction data extracted from human BioCarta pathways
for my
>differentially expressed genes?
>
>if anyone has done please let me know...
>
>
>Thank you,
>Saurin
>
>
>
>