Hi, In doing justRMA on about 27 133plus chips we got the error below. Yet it finishes OK. Can we believe the results? Thanks Harry Hurd Dept of Statistics UNC Chapel Hill doing just.rma Background correcting Normalizing Calculating Expression Warning message: Incompatible phenoData object. Created a new one. in: just.rma("aZIT 6 hr-U133 Plus 2.0.CEL", "aZIT 24 hr-U133 Plus 2.0.CEL", [[alternative HTML version deleted]]

The expression values should be fine. The error is related to the phenoData slot in the AffyBatch object (if you had called justRMA() rather than just.rma() you wouldn't get that error message) Ben On Sun, 2005-01-30 at 23:09 -0500, Harry Hurd wrote: > Hi, > > In doing justRMA on about 27 133plus chips we got the error below. Yet it finishes OK. Can we believe the results? > > Thanks > > Harry Hurd > Dept of Statistics > UNC Chapel Hill > > doing just.rma > Background correcting > Normalizing > Calculating Expression > Warning message: > Incompatible phenoData object. Created a new one. > in: just.rma("aZIT 6 hr-U133 Plus 2.0.CEL", "aZIT 24 hr-U133 Plus > 2.0.CEL", > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor