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Vinicius Henrique da Silva
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40
@vinicius-henrique-da-silva-6713
Last seen 2.4 years ago
Brazil
I would like to change the legend name, size and position in cnetplot (from clusterProfiler, DOSE and ReactomePA packages). Let´s use the manual example:
library(clusterProfiler)
data(geneList, package="DOSE")
gene <- names(geneList)[abs(geneList) > 2]
head(gene)
ego <- enrichGO(gene = gene,
universe = names(geneList),
organism = "human",
ont = "CC",
pAdjustMethod = "BH",
pvalueCutoff = 0.01,
qvalueCutoff = 0.05,
readable = TRUE)
head(summary(ego))
cnetplot(ego, categorySize="pvalue", foldChange=geneList)
The 'foldChange' parameter is very useful to show a number of quantitative genomic features. How could be the best way to modify its legend like in a normal plot. For example:
legend("top", legend="test", pch=21)
I would be grateful for some ideas!
