Dear all, I'm wondering why hclust and dendrogram objects lead to different plots: Let's say "hc" is an hclust object. Now, > plot(hc) gives the first tree plot. Next, I change the feature ordering in hc$order slightly (no overlapping branches). Now, > plot(hc) gives a second plot that looks like intended (actually, I just swapped the first two subtrees). But with > plot(as.dendrogram(hc)) I am back at the first plot (well, at least with the same tree structure, the format changes of course). How can I keep the intended ordering when plotting an dendrogram object? Thanks a lot, Stefanie. --- Stefanie Scheid Max Planck Institute for Molecular Genetics Dept. of Computational Molecular Biology Ihnestra?e 63-73 D-14195 Berlin, Germany phone: +49 (0)30 8413 1178 fax: +49 (0)30 8413 1176 http://www.molgen.mpg.de/~scheid email: stefanie.scheid@molgen.mpg.de