I don't think either of those are Bioconductor packages (or R packages at all, judging from a quick Google search), so this forum is the wrong place to ask. Nonetheless, here's some free advice - if you want to use the implementation of those methods in the caper package, then you should install caper; and you should also be working on the latest version of R (3.2.3), unless you have a good reason to be using an older version.