Entering edit mode
Ken Termiso
▴
250
@ken-termiso-1087
Last seen 10.3 years ago
Hi,
I'm using the affy HG-U133A_2_annot_csv.zip annotation file to
annotate my
data (which may be a bad idea to begin with..?), and would like to be
able
to use the GO slim categories to annotate my data (see
http://www.spatial.maine.edu/~mdolan/MGI_GO_Slim.html), instead of the
extremely detailed GO categories already present in the affymetrix
file -
Gene.Ontology.Biological.Process, Gene.Ontology.Cellular.Component,
Gene.Ontology.Molecular.Function.
Basically, the issue is that I don't want to have the 2,000 - 5,000
different annotation groups in my file. I want to be able to run
subset() on
very general groups, like "development" or "death".
Thanks in advance,
Ken