Hi!

I'm trying to replicate the example given in the plotBed example in the Suhi vignette, the one using the circles. However the Sushi_ChIPSeq_severalfactors.bed example dataset does not include a "color" column in the current version. Is this a bug?

Cheers

That is correct.  There is not a color column.  You need to assign a color.  Check out the example by executing "?plotBed"

The fourth line in the example assigns the color.

Sushi_ChIPSeq_severalfactors.bed$color = heat.colors(max(Sushi_ChIPSeq_severalfactors.bed$row))[Sushi_ChIPSeq_severalfactors.bed$row]

Thanks so much.  Please tell me if this does or does not answer your question.

Cheers,

Doug