Hi All, I create an affybatch using: Data<-ReadAffy() myqc<-qc(Data) What is the "default" algorithm that is invoked if i don't specify rma/mas5.0!! Thanks, Hrishi

Hi, The QC metrics are calculated as described in the vignette/QC documentation you'll find in the package... If you use x <- call.exprs(Data) It'll default to using RMA... Have a look at help("call.exprs") for more details... Crispin -----Original Message----- From: Hrishikesh Deshmukh [mailto:d_hrishikesh@yahoo.com] Sent: 23 March 2005 14:40 To: Crispin Miller; Georg Otto Cc: bioconductor@stat.math.ethz.ch Subject: RE: [BioC] simpleaffy Hi All, I create an affybatch using: Data<-ReadAffy() myqc<-qc(Data) What is the "default" algorithm that is invoked if i don't specify rma/mas5.0!! Thanks, Hrishi __________________________________ Do you Yahoo!? Yahoo! Small Business - Try our new resources site! http://smallbusiness.yahoo.com/resources/ -------------------------------------------------------- This email is confidential and intended solely for the use o...{{dropped}}