Entering edit mode
The 'grasp2' resource appears to be broken with a HTTP 403 error in both release and devel
> suppressPackageStartupMessages(library(AnnotationHub)) > ah <- AnnotationHub() snapshotDate(): 2016-05-12 > ah["AH21414"] AnnotationHub with 1 record # snapshotDate(): 2016-05-12 # names(): AH21414 # $dataprovider: NHLBI # $species: Homo sapiens # $rdataclass: SQLiteConnection # $title: Bioconductor distribution of grasp2 v. 2.0.0.0 # $description: Build 2.0.0.0 of the grasp2 data base, with 2,082 GWAS studi... # $taxonomyid: 9606 # $genome: hg19 # $sourcetype: GRASP # $sourceurl: https://s3.amazonaws.com/NHLBI_Public/GRASP/GraspFullDataset2.zip # $sourcelastmodifieddate: NA # $sourcesize: NA # $tags: SNP, Annotation, GRASP2 # retrieve record with 'object[["AH21414"]]' > ah[["AH21414"]] downloading from ‘https://annotationhub.bioconductor.org/fetch/25509’ retrieving 1 resource Downloading: 240 B Error: failed to load resource name: AH21414 title: Bioconductor distribution of grasp2 v. 2.0.0.0 reason: 1 resources failed to download In addition: Warning message: download failed hub path: ‘https://annotationhub.bioconductor.org/fetch/25509’ cache path: ‘/home/other/phickey/.AnnotationHub/25509’ reason: Forbidden (HTTP 403). > sessionInfo() R version 3.3.0 Patched (2016-05-20 r70657) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Red Hat Enterprise Linux Server release 6.5 (Santiago) locale: [1] LC_CTYPE=en_AU.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_AU.UTF-8 LC_COLLATE=en_AU.UTF-8 [5] LC_MONETARY=en_AU.UTF-8 LC_MESSAGES=en_AU.UTF-8 [7] LC_PAPER=en_AU.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] parallel stats graphics grDevices datasets utils methods [8] base other attached packages: [1] AnnotationHub_2.4.0 BiocGenerics_0.18.0 repete_0.0.0.9004 [4] devtools_1.11.1 loaded via a namespace (and not attached): [1] Rcpp_0.12.5 AnnotationDbi_1.34.2 [3] knitr_1.12.3 magrittr_1.5 [5] IRanges_2.6.0 munsell_0.4.3 [7] xtable_1.8-2 colorspace_1.2-6 [9] R6_2.1.2 stringr_1.0.0 [11] httr_1.1.0 plyr_1.8.3 [13] tools_3.3.0 Biobase_2.32.0 [15] DBI_0.4-1 withr_1.0.1 [17] htmltools_0.3.5 digest_0.6.9 [19] interactiveDisplayBase_1.10.0 shiny_0.13.2 [21] pryr_0.1.2 S4Vectors_0.10.0 [23] codetools_0.2-14 curl_0.9.7 [25] mime_0.4 memoise_1.0.0 [27] RSQLite_1.0.0 stringi_1.0-1 [29] BiocInstaller_1.22.1 scales_0.4.0 [31] stats4_3.3.0 httpuv_1.3.3 > BiocInstaller::biocVersion() [1] ‘3.3’
Yep, working for me too. Thanks, Valerie!