Re: justGCRMA and binary .CDF file
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@james-w-macdonald-5106
Last seen 1 day ago
United States
You need the _probe_tab file. If this is a standard chip, you can find this on the Affy website. Best, Jim James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 >>> <andrew.w.wooster@gsk.com> 04/07/05 5:47 PM >>> I want to run justGCRMA, which requires both a cdf and a probe package. The Bioconductor MetaData repository does not contain a package for my chip. I do have a binary .CDF file. I am able to create a cdf package using make.cdf.package(); But how do I create the probe package? I've tried using makeProbePackage () from the matchprobes library. But this assumes a text datafile as input. -Andrew ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.
Microarray Cancer cdf probe affy matchprobes Microarray Cancer cdf probe affy • 683 views
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