Hello:
I am trying to download GSE data tables and encountered the following error.
I cannot find a proper solution. Could someone help.
Thanks
Adrian
> GSE2034_clindata=getGSEDataTables("GSE2034")
No encoding supplied: defaulting to UTF-8.
Error in UseMethod("xpathApply") :
no applicable method for 'xpathApply' applied to an object of class "NULL"
In addition: Warning message:
In xmlRoot.XMLInternalDocument(xmlParseDoc(txt)) : empty XML document
> sessionInfo()
R version 3.3.1 (2016-06-21)
Platform: i386-w64-mingw32/i386 (32-bit)
Running under: Windows 8.1 x64 (build 9600)
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats4 parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] hgu133ahsentrezg.db_20.0.0 org.Hs.eg.db_3.3.0 hgu133ahsentrezgprobe_20.0.0 hgu133ahsentrezgcdf_20.0.0 AnnotationDbi_1.34.4
[6] IRanges_2.6.1 S4Vectors_0.10.2 gcrma_2.44.0 affy_1.50.0 GEOquery_2.38.4
[11] Biobase_2.32.0 BiocGenerics_0.18.0 BiocInstaller_1.22.3
loaded via a namespace (and not attached):
[1] XVector_0.12.1 splines_3.3.1 zlibbioc_1.18.0 R6_2.1.2 httr_1.2.1 tools_3.3.1 DBI_0.5
[8] preprocessCore_1.34.0 affyio_1.42.0 bitops_1.0-6 curl_1.2 RCurl_1.95-4.8 RSQLite_1.0.0 Biostrings_2.40.2
[15] XML_3.98-1.4