Hi, I am using 'simpleaffy' V 2.10 on Solaris R 2.0.1 and I get an error when running qc.affy > x AffyBatch object size of arrays=732x732 features (20935 kb) cdf=Mouse430A_2 (22690 affyids) number of samples=5 number of genes=22690 annotation=mouse430a2 > x.mas5 Expression Set (exprSet) with 22690 genes 5 samples phenoData object with 2 variables and 5 cases varLabels sample: sample treatment: treatment >qc <- qc(x,x.mas5) Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: mouse430a2cdf Even though I have installed mouse430a2cdf. Thanks for any help in advance, Steve ------------------------------------------------------------------ Computational Biology Research Group Medical Sciences Division Weatherall Institute of Molecular Medicine/Sir William Dunn School Oxford University

Hi Steve, I've just checked and this and uploaded a fix to the development branch (2.10-3). Hopefully it should bubble through and appear on the website in the next few days... Cheers, Crispin -----Original Message----- From: bioconductor-bounces@stat.math.ethz.ch [mailto:bioconductor-bounces@stat.math.ethz.ch] On Behalf Of Steve Taylor Sent: 22 April 2005 14:42 To: bioconductor@stat.math.ethz.ch Subject: [BioC] qc.affy problem Hi, I am using 'simpleaffy' V 2.10 on Solaris R 2.0.1 and I get an error when running qc.affy > x AffyBatch object size of arrays=732x732 features (20935 kb) cdf=Mouse430A_2 (22690 affyids) number of samples=5 number of genes=22690 annotation=mouse430a2 > x.mas5 Expression Set (exprSet) with 22690 genes 5 samples phenoData object with 2 variables and 5 cases varLabels sample: sample treatment: treatment >qc <- qc(x,x.mas5) Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: mouse430a2cdf Even though I have installed mouse430a2cdf. Thanks for any help in advance, Steve ------------------------------------------------------------------ Computational Biology Research Group Medical Sciences Division Weatherall Institute of Molecular Medicine/Sir William Dunn School Oxford University _______________________________________________ Bioconductor mailing list Bioconductor@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor -------------------------------------------------------- This email is confidential and intended solely for the use o...{{dropped}}