Hi，

I am trying to learn to use FunciSNP Packages to find function SNP. 

However, when I follow the tutorial of FunciSNP to run practice code, I found that the FunciSNP could not connect to the three FTPs, which are ebi, ncbi and apollp. Because of that,  I could not get the data and run FunciSNP.

Could anyone give me a help? Some detailed information is as follow.

（1）The code：

library(FunciSNP);

glioma.snp <- file.path(system.file('extdata', package='FunciSNP'),

dir(system.file('extdata',package='FunciSNP'), pattern='.snp$'));

glioma.bio <- system.file('extdata',package='FunciSNP');

glioma <- getFSNPs(snp.regions.file=glioma.snp, bio.features.loc = glioma.bio)

（2）the Output：

Version: 1.14.0

System: Windows :-( ; parallel code not in effect,

                  reverting to 1 core

::args used::

          verbose:                          FALSE

          cores in use:                     2

          snp.regions.file:                 C:/Program Files/R/R-3.3.1/library/FunciSNP/extdata/glioma.snp

          p-value adjustment by:            BH

          Bio Features:                     7: TFBS_Nrsf_U87, TFBS_Pol2_U87, CTCF_only.known, EncodeDnaseI_only.known, EncodeDnaseI_withCTCF.known, EncodeFaire.known, knownGene.Promoters.known

          Number of TagSNPs Interrogated:   4 representing 4 unique tagSNPs

gethost: 11004

select time-out

[kftp_connect_file] 350 Restart position accepted (0).

gethost: 11004

select time-out

[kftp_connect_file] 350 Restart position accepted (0).

Delay Connecting to ebi, waiting 11 seconds to try SNP rs498872 again

gethost: 11004

select time-out

[kftp_connect_file] 350 Restart position accepted (0).

Delay Connecting to apollo, waiting 11 seconds to try SNP rs498872 again

gethost: 11004

select time-out

[kftp_connect_file] 350 Restart position accepted (0).

Delay Connecting to ncbi, waiting 7 seconds to try SNP rs498872 agai


Warning message:

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