Hello,

I'm interested in using ChIPseeker but there is a point I don't quite understand:
As plotAvgProf() only needs a BED file in order to generate the profile plot, how can you calculate the Read Count Frequency ?
Also, I don't manage to modify the plot aspect, like lines width or color.

Thanks a lot for your help !

pls read the vignette carefully before asking question like this.

The input of plotAvgProf() is definitely not a BED file.