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Stane
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@stane-10974
Last seen 7.0 years ago
Hi, I have been trying to retrieve a list of genes associated with a particular GO terms in R
Using Biomart with the homo sapiens ensembl dataset I am getting a subset of the gene list from the website http://amigo.geneontology.org/
go_list_cell_cycle <- getBM(attributes=c('hgnc_symbol', 'go_id'),
filters = 'go_id', values = 'GO:0007049', mart = ensembl)
I was wondering if there were better solutions usable directly from R, otherwise, I will just manually save the data from the website.
Best
maybe https://www.biostars.org/p/201064/#201077
very good indeed, the genes seem to be all present with your package, thank you !