Hello, when I try to perform a lollipopPlot on certain genes in my dataset, I get an error: "Error in FUN(X[[i]], ...) : subscript out of bounds"
Here is the command that I am using with the output in bold below:
lollipopPlot(maf = occc, gene = 'ARID1A', AACol='amino_acid_change')
2 transcripts available. Use arguments refSeqID or proteinID to manually specify tx name.
HGNC refseq.ID protein.ID aa.length Start End Label
1: ARID1A NM_006015 NP_006006 2285 1017 1104 ARID
2: ARID1A NM_006015 NP_006006 2285 1975 2231 DUF3518
3: ARID1A NM_139135 NP_624361 2068 1017 1104 ARID
4: ARID1A NM_139135 NP_624361 2068 1758 2014 DUF3518
Using longer transcript NM_006015 for now.
Error in FUN(X[[i]], ...) : subscript out of bounds
Does anyone have any suggestions? I only get this for certain genes.
Many Thanks!
Kelly