ConsensusClusterPlus - add labels to plot
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@jane-merlevede-5019
Last seen 6.1 years ago

Dear ConsensusClusterPlus users,

 

Is it possible to add labels (colnames of the data matrix) on the plots generated by ConsensusClusterPlus: dendograms of consensus matrix, tracking plots and item consensus barplots?

It would be nice to see the cluster membership of each sample across the number of tested clusters.

 

I am using R version 3.3.1 and ConsensusClusterPlus version 1.38.0 this way:

rcc2 = ConsensusClusterPlus(d,maxK=8,reps=1000,pItem=0.8,pFeature=0.7, clusterAlg="hc", title="clustering pearson hclust",distance="pearson",plot="pdf", writeTable=TRUE)
calcICL(rcc2,title="clustering pearson hclust",plot="pdf", writeTable=TRUE)

 

Do you know other R packages that allow bootstrapping both samples and features?

Thank you in advance,

Jane

consensusclusterplus • 1.6k views
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