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Hello everyone !
I'm trying to preprocess paired-end reads in the QuasR Package, but I unfortunately get this error, which is surprising for me because that code worked on windows but not on linux (fedora).
This could be a very naive question, and I apologize if it is... But thank you so much for helping me !
> infiles1 <- file.path("/run/media/ahmed/LACIE/RNAseq_Florence_JBD", c("RC_FA225_TTAGGC_R1.fastq.gz"))
> infiles2 <- file.path("/run/media/ahmed/LACIE/RNAseq_Florence_JBD", c("RC_FA225_TTAGGC_R2.fastq.gz"))
> outfiles1 <- paste(tempfile(pattern=c("output_1_")),".fastq",sep="")
> outfiles2 <- paste(tempfile(pattern=c("output_2_")),".fastq",sep="")
> resFA225 <- preprocessReads(filename=infiles1,
+ filenameMate=infiles2,
+ outputFilename=outfiles1,
+ outputFilenameMate=outfiles2,
+ nBases=0)
filtering /run/media/ahmed/LACIE/RNAseq_Florence_JBD/RC_FA225_TTAGGC_R1.fastq.gz and
/run/media/ahmed/LACIE/RNAseq_Florence_JBD/RC_FA225_TTAGGC_R2.fastq.gz
Error in writeFastq(chunks[filter], tmpOutputFilename, mode = mode, qualityType = "Auto", :
failed to write record 14
Does this give an idea to someone ?
Thank you very much !!
Guillaume
