Supplying ToPASeq a list of fold changes and their associated p-values
1
0
Entering edit mode
rubi ▴ 110
@rubi-6462
Last seen 6.3 years ago

Hi,

 

Is it possible to run any of ToPASeq's: TopologyGSA, DEGraph, clipper, SPIA, TAPPA, PRS, PWEA with a custom list of fold-changes and associated p-values rather than having these functions run a DE analysis internally?

It doesn't seem so from the manual but that would be very helpful.

ToPASeq • 991 views
ADD COMMENT
0
Entering edit mode
theobroma22 ▴ 10
@theobroma22-11920
Last seen 7.9 years ago

Your question is hard to understand. Can you elaborate or provide some simulated, or example data? What do you mean by 'custom' FCs and their associated p-value...do you mean simulated data? 

ADD COMMENT

Login before adding your answer.

Traffic: 770 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6