Download of package ‘org.Mm.eg.db’ failed
1
0
Entering edit mode
kevin • 0
@28252ac1
Last seen 3.7 years ago
Hong Kong

I wanna install "org.Mm.eg.db" to my macbookpro, and error accurred. I tried using different network connections, but it didn't matter. Thanks!

BiocManager::install("org.Mm.eg.db")

# Bioconductor version 3.12 (BiocManager 1.30.10), R 4.0.4 (2021-02-15)
# Installing package(s) 'org.Mm.eg.db'
# installing the source package ‘org.Mm.eg.db’

# 试开URL’https://bioconductor.org/packages/3.12/data/annotation/src/contrib/org.Mm.eg.db_3.12.0.tar.gz'
# Content type 'application/x-gzip' length 73584784 bytes (70.2 MB)
# ===========
# downloaded 16.5 MB

# Error in download.file(url, destfile, method, mode = "wb", ...) : 
#  download from 'https://bioconductor.org/packages/3.12/data/annotation/src/contrib/org.Mm.eg.db_3.12.0.tar.gz' failed
# 此外: Warning messages:
# 1: In download.file(url, destfile, method, mode = "wb", ...) :
#  downloaded length 17310872 != reported length 73584784
# 2: In download.file(url, destfile, method, mode = "wb", ...) :
#  URL 'https://bioconductor.org/packages/3.12/data/annotation/src/contrib/org.Mm.eg.db_3.12.0.tar.gz': Timeout of 60 
# seconds was reached
# Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
# download of package ‘org.Mm.eg.db’ failed
# Old packages: 'utf8'
# Update all/some/none? [a/s/n]: 
# n

sessionInfo( )
# R version 4.0.4 (2021-02-15)
# Platform: x86_64-apple-darwin17.0 (64-bit)
# Running under: macOS Big Sur 10.16
org.Mm.eg.db • 2.4k views
ADD COMMENT
0
Entering edit mode
kevin • 0
@28252ac1
Last seen 3.7 years ago
Hong Kong

Solved. I first download source package (org.Mm.eg.db_3.12.0.tar.gz ) from bioconductor manually and then install the package using Rstudio "install from Package Archive File" option.

ADD COMMENT

Login before adding your answer.

Traffic: 313 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6