I am trying to process a dataset from GEO.
rawdata <- getGEO("GSE32992", GSEMatrix =TRUE, getGPL=FALSE)
class(rawdata)
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"ExpressionSet"
The problem is when I try to normalize it:
oligo::rma(raw_data)
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#Error in (function (classes, fdef, mtable) :
#unable to find an inherited method for function ‘rma’ for signature ‘"ExpressionSet"’
Is not working even:
oligo:rma(raw_data, normalize=FALSE)
-----------------------------------------------------------------------------------
#Error in (function (classes, fdef, mtable) :
#unable to find an inherited method for function ‘rma’ for signature ‘"ExpressionSet"’
What can I do with my object to trasform it to a proper one?