Question

DESeq2 PlotCounts() function

0

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Nayrouz • 0

@ea088d93

Last seen 2.5 years ago

Canada

Hello,

Is it possible to label samples when using plotCounts() function? I don't have a lot of samples and so it would be useful to label them.


plotCounts(dds, gene=which.min(res$padj), intgroup="condition")

DESeq2 • 1.7k views

ADD COMMENT • link updated 4.0 years ago by Michael Love 43k • written 4.0 years ago by Nayrouz • 0

score 0 · Answer 1 · 2021-10-21

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Entering edit mode

swbarnes2 ★ 1.4k

@swbarnes2-14086

Last seen 3 days ago

San Diego

PlotCounts does what it does. Learn to use ggplot, you can add labels with that.

ADD COMMENT • link 4.0 years ago swbarnes2 ★ 1.4k

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Yes I think we show this in the workflow.

Specifically see the returnData argument.

ADD REPLY • link 4.0 years ago Michael Love 43k