Entering edit mode
Hello,
How could I use the lfcshrink()
function when I need to examine the condition effect on genotype III?
results(dds, contrast=list( c("condition_B_vs_A","genotypeIII.conditionB") ))
I tried the below code but I got an error.
lfcShrink(dds, contrast = list(c("condition_B_vs_A", "genotypeIII.conditionB")))
#Error in lfcShrink(dds, contrast = list(c("condition_B_vs_A", "genotypeIII.conditionB")), :
#type='apeglm' shrinkage only for use with 'coef'