Error: package or namespace load failed for 'EnsDb.Mmusculus.v79'
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kelvin • 0
@1e84718b
Last seen 2.9 years ago
Hong Kong

When I tried to install EnsDb.Mmusculus.v79 package, I met this problem. It showed that

Error: package or namespace load failed for 'EnsDb.Mmusculus.v79': .onLoad failed in loadNamespace() for 'EnsDb.Mmusculus.v79', details: call: NULL error: disk I/O error Error: loading failed Execution halted ERROR: loading failed

and I used command followed to install the package.

BiocManager::install("EnsDb.Mmusculus.v79")

May anyone know how to fix this problem? Please.Thanks for your attention.

Besides, I also tried to use conda to install this package, but in R I couldn't find the package installed in conda environment. The environment includes R that I use. I can find the package when I use "conda list" to check which packages I've installed.

conda install bioconductor-ensdb.mmusculus.v79

**sessionInfo( )

Bioconductor version 3.13 (BiocManager 1.30.16), R 4.1.1 (2021-08-10)**

EnsDb.Mmusculus.v79 EnsDb.Mmusculus.v75 ensembldb • 1.6k views
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@james-w-macdonald-5106
Last seen 1 day ago
United States

I don't use conda to install R or R packages, so it may well be an interaction between the two. However, disk I/O error sounds hardware based. Is your disk full?

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Actually, I perform my codes on the server of the university where I study, so I have no idea about the server and no root authority.

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To me it seems you have no permissions to install packages.

Please have a word with your system administrators. They should be able to tell you how you can configure your system to install R packages without the need of admin permissions.

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