Error in .testForValidKeys(x, keys, keytype, fks) :
1
0
Entering edit mode
@943de8f9
Last seen 2.6 years ago
Czechia

I am using the "org.Ss.eg.db" package to input gene names to my list of ENSSSCG....

sigs <- readxl::read_excel("C:\R\C_vs_F_genes_genelist_Galaxy.xlsx")

sigs.df <- as.data.frame(sigs)

sigs.df

sigs.df <- mapIds(org.Ss.eg.db, keys = rownames(sigs.df), keytype = "ENTREZID", column = "GENENAME")

A message returned

Error in .testForValidKeys(x, keys, keytype, fks) : None of the keys entered are valid keys for 'ENTREZID'. Please use the keys method to see a listing of valid arguments.

Please, help me to solve the problem.

map.ID.to.genenames • 7.2k views
ADD COMMENT
0
Entering edit mode
@james-w-macdonald-5106
Last seen 10 hours ago
United States

The error message is meant to be self-explanatory. At the risk of being redundant, it says that none of the rownames of your data.frame are NCBI Gene IDs. Without knowing what those rownames are, it's impossible for anybody to help you.

ADD COMMENT

Login before adding your answer.

Traffic: 495 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6