Could I use HiCDCPlus in plant genome?

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1037144675 • 0

@4ee04a28

Last seen 8 weeks ago

France

Dear all,

Thank you a lot for providing great tool.

However, it's seem that the HiCDCPlus can be used in human and mouse. I would like to use it in plant genome.

Could you tell me how to do?

Thank you in advance.

Best wishes.


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HiC-DC+ HiCDCPlus • 820 views

ADD COMMENT • link updated 2.3 years ago by scott • 0 • written 2.7 years ago by 1037144675 • 0

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We only support species with annotations on BSgenome with the format BSgenome.<gen>.UCSC.<gen_ver>. Could you please check this website if your species of interest exists here https://bioconductor.org/packages/release/data/annotation/?

ADD REPLY • link 2.5 years ago merve.sahn • 0

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Hi Merve, the genome I am interested in ('BSgenome.Athaliana.TAIR.TAIR9') does not have 'UCSC' in the name. Any suggestions for how I can use this genome with HiCDCPlus? Would it be possible to add more flexible support for other genomes to HiCDCPlus in a future release?

ADD REPLY • link 2.3 years ago scott • 0

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