differential gene expression using limma package
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aayushi • 0
@6925603c
Last seen 3.0 years ago
India

hello everyone i am trying to prform differntial gene expression using the ima package u i am receiving the following error. the due date for the assignment is very close I will be glad if anyone could help

+     makeContrasts("Heart_Diabetic_failure-Normal",
+                   "Heart_Non_Diabetic_failure-Normal",
+                   levels=design);
> fit2 <- contrasts.fit(fit, contrast.matrix)
> fit2 <- eBayes(fit2)
Error in .ebayes(fit = fit, proportion = proportion, stdev.coef.lim = stdev.coef.lim,  : 
  No residual degrees of freedom in linear model fits
+"Heart_Non_Diabetic_failure-Normal" +makeContrasts("Heart_Diabetic_failure-Normal" • 761 views
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Entering edit mode
@gordon-smyth
Last seen 2 hours ago
WEHI, Melbourne, Australia

See previous answer to the same question: ERROR: No residual degrees of freedom in linear model fits

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