Hi, I have been unsuccessfully trying to download GEO Supplementary files of GSE68777 onto my R using this code: getGEOSuppFiles("GSE68777"). I updated GEOquery package, checked that there is indeed available supplementary files for my geo query and that I have enough space on my hard drive to download the files.
I keep getting the error message:
```Error in getGEOSuppFiles("GSE68777") : Failed to download /Users/GSE68777/GSE68777_RAW.tar!
sessionInfo( )
```locale: [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
attached base packages: [1] parallel grid stats4 stats graphics [6] grDevices utils datasets methods base
other attached packages:
[1] GEOquery_2.62.2 DEXSeq_1.40.0
[3] RColorBrewer_1.1-2 AnnotationDbi_1.54.1
[5] DESeq2_1.32.0 BiocParallel_1.28.2
[7] rols_2.20.1 minfi_1.38.0
[9] bumphunter_1.34.0 locfit_1.5-9.4
[11] iterators_1.0.14 foreach_1.5.2
[13] Biostrings_2.60.2 XVector_0.32.0
[15] cummeRbund_2.36.0 Gviz_1.36.2
[17] rtracklayer_1.52.1 fastcluster_1.2.3
[19] reshape2_1.4.4 ggplot2_3.3.5
[21] RSQLite_2.2.10 edgeR_3.34.1
[23] limma_3.48.3 bsseq_1.30.0
[25] SummarizedExperiment_1.22.0 Biobase_2.52.0
[27] MatrixGenerics_1.4.3 matrixStats_0.61.0
[29] GenomicRanges_1.44.0 GenomeInfoDb_1.28.4
[31] IRanges_2.26.0 S4Vectors_0.30.2
[33] AnnotationHub_3.0.2 BiocFileCache_2.0.0
[35] dbplyr_2.1.1 BiocGenerics_0.40.0
loaded via a namespace (and not attached):
[1] utf8_1.2.2
[2] R.utils_2.11.0
[3] tidyselect_1.1.2
[4] htmlwidgets_1.5.4
[5] munsell_0.5.0
[6] codetools_0.2-18
[7] preprocessCore_1.54.0
[8] statmod_1.4.36
[9] withr_2.4.3
[10] colorspace_2.0-3
[11] filelock_1.0.2
[12] knitr_1.37
[13] rstudioapi_0.13
[14] GenomeInfoDbData_1.2.6
[15] hwriter_1.3.2
[16] bit64_4.0.5
[17] rhdf5_2.36.0
[18] vctrs_0.3.8
[19] generics_0.1.2
[20] xfun_0.29
[21] biovizBase_1.40.0
[22] R6_2.5.1
[23] illuminaio_0.34.0
[24] AnnotationFilter_1.16.0
[25] bitops_1.0-7
[26] rhdf5filters_1.4.0
[27] cachem_1.0.6
[28] reshape_0.8.8
[29] DelayedArray_0.18.0
[30] assertthat_0.2.1
[31] promises_1.2.0.1
[32] BiocIO_1.2.0
[33] scales_1.1.1
[34] nnet_7.3-17
[35] gtable_0.3.0
[36] ensembldb_2.16.4
[37] rlang_1.0.1
[38] genefilter_1.74.1
[39] splines_4.1.1
[40] lazyeval_0.2.2
[41] dichromat_2.0-0
[42] checkmate_2.0.0
[43] BiocManager_1.30.16
[44] yaml_2.3.5
[45] GenomicFeatures_1.44.2
[46] backports_1.4.1
[47] httpuv_1.6.5
[48] Hmisc_4.6-0
[49] tools_4.1.1
[50] nor1mix_1.3-0
[51] ellipsis_0.3.2
[52] siggenes_1.66.0
[53] Rcpp_1.0.8
[54] plyr_1.8.6
[55] base64enc_0.1-3
[56] sparseMatrixStats_1.4.2
[57] progress_1.2.2
[58] zlibbioc_1.38.0
[59] purrr_0.3.4
[60] RCurl_1.98-1.6
[61] prettyunits_1.1.1
[62] rpart_4.1.16
[63] openssl_2.0.0
[64] cluster_2.1.2
[65] magrittr_2.0.2
[66] data.table_1.14.2
[67] ProtGenerics_1.24.0
[68] hms_1.1.1
[69] mime_0.12
[70] xtable_1.8-4
[71] XML_3.99-0.9
[72] jpeg_0.1-9
[73] mclust_5.4.9
[74] gridExtra_2.3
[75] compiler_4.1.1
[76] biomaRt_2.48.3
[77] tibble_3.1.6
[78] crayon_1.5.0
[79] R.oo_1.24.0
[80] htmltools_0.5.2
[81] tzdb_0.2.0
[82] later_1.3.0
[83] Formula_1.2-4
[84] tidyr_1.2.0
[85] geneplotter_1.70.0
[86] DBI_1.1.2
[87] MASS_7.3-55
[88] rappdirs_0.3.3
[89] readr_2.1.2
[90] Matrix_1.4-0
[91] permute_0.9-7
[92] cli_3.2.0
[93] quadprog_1.5-8
[94] R.methodsS3_1.8.1
[95] pkgconfig_2.0.3
[96] GenomicAlignments_1.28.0
[97] foreign_0.8-82
[98] xml2_1.3.3
[99] annotate_1.70.0
[100] rngtools_1.5.2
[101] multtest_2.48.0
[102] beanplot_1.2
[103] doRNG_1.8.2
[104] scrime_1.3.5
[105] stringr_1.4.0
[106] VariantAnnotation_1.40.0
[107] digest_0.6.29
[108] base64_2.0
[109] htmlTable_2.4.0
[110] DelayedMatrixStats_1.14.3
[111] restfulr_0.0.13
[112] curl_4.3.2
[113] shiny_1.7.1
[114] Rsamtools_2.8.0
[115] gtools_3.9.2
[116] rjson_0.2.21
[117] jsonlite_1.8.0
[118] lifecycle_1.0.1
[119] nlme_3.1-155
[120] Rhdf5lib_1.14.2
[121] askpass_1.1
[122] BSgenome_1.60.0
[123] fansi_1.0.2
[124] pillar_1.7.0
[125] lattice_0.20-45
[126] KEGGREST_1.32.0
[127] fastmap_1.1.0
[128] httr_1.4.2
[129] survival_3.3-0
[130] interactiveDisplayBase_1.30.0
[131] glue_1.6.2
[132] png_0.1-7
[133] BiocVersion_3.13.1
[134] bit_4.0.4
[135] stringi_1.7.6
[136] HDF5Array_1.20.0
[137] blob_1.2.2
[138] latticeExtra_0.6-29
[139] memoise_2.0.1
[140] dplyr_1.0.8
